Home > Keyword search > FF536789

Summary
Sequence ID FF536789
Sequence Length 713 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_021498 (FF536789)
 
 
Sequence
>FF536789
GATTGCATCTGTTATCAATGCGGAGTGGAGGTGACCGACTGAGACTGTTCAAAGCTGATTTGCAGGAAGAAGGCAGCTTT
GATGAGGCATGTTGCAGCTTCAATGGAATTCAACGTCACTGAAAACGCCAACGTTGAGAACTATGTCCAGACAAATGTCA
TTGATCCTGCAATCAAAGGAACTCTAAACCTCCTCAACTCTTGCTTGAAGTCCAAATCTGTTAAAAGGGTTGTTTTCACA
TCATCAATCAGTACTCTAACAGCTAAAGACAGCTCTGGAAAATGGAGAGATGTAGTTGACGAAACTTGCCAGATTCCTGT
TGATTATGTCTGGAATGCAAAAGCAACTGGATGGGTTTATGCACTCTCCAAGCTTCTCACAGAGGAAGCAGCATTCCAGT
ATGCAAACCACAATGGCATTGATCTTGTTTCAGTAATAACAGCAACTGTTGCTGGTCCATTCCTCACCCCAAGTGTCCCT
TCAAGCATTCAAGTTCTCTTATCTCCATTGACAGGTGATTCCAAGTATTTTTCAATACTATCAGCAGTTAATGCTCGAAT
GGGTTCAATAGCATTAGTCCACATTGAAGATATATGTAATGCACATATATATCTAATGGAGAACAAGACAGCAAAAGGGA
GATACCTATGCTGTTCTCAGAGTTATCTGATGTCTGAGTTAGTTGATCATCTTGCAGAAGAGTATCCTTGCTC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002522817.1| cinnamoyl-CoA reductase, putative [Ricinus communis] gb|EEF39515.1| cinnamoyl-CoA reductase, putative [Ricinus communis] 326 1e-96
  Manihot esculenta blastn  cassava4.1_016097m|PACid:17961623 698 0.0
  FGENESH CDS blastn  scaffold06675_FGENESH4 5 exon (s) 17670 - 19712 711 bp, chain - 698 0.0
  Arabidopsis thaliana blastx  AT4G27250.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:13642803-13644425 REVERSE LENGTH=354 276 2e-78
  Populus trichocarpa blastx  POPTR_0001s44120.1|PACid:18236376 319 5e-95
  Vitis vinifera blastx  GSVIVT01014573001|PACid:17825531 321 5e-95
  Ricinus communis blastx  28166.m001043|PACid:16800134 326 4e-99
 
 
Gene Ontology 
InterProScan
GO:0003824
Molecular Function
catalytic activity
GO:0005488
Molecular Function
binding
GO:0008152
Biological Process
metabolic process
 
 
InterProScan result 
Sequence: FF536789_1_ORF2  Length: 224 aa
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370[12-204]T 0.0029 PF01370 EpimeraseEpimerase
InterPro
IPR016040
Domain
NAD(P)-binding
G3DSA:3.40.50.720[40-223]T 1.5e-13 G3DSA:3.40.50.720 no descriptionno description
SSF51735[16-222]T 8.2e-20 SSF51735 NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domains
noIPR
unintegrated
unintegrated
PTHR10366[16-222]T 1.4e-77 PTHR10366 NAD DEPENDENT EPIMERASE/DEHYDRATASENAD DEPENDENT EPIMERASE/DEHYDRATASE
PTHR10366:SF9[16-222]T 1.4e-77 PTHR10366:SF9 CINNAMOYL-COA REDUCTASECINNAMOYL-COA REDUCTASE
seg[48-59]? NA seg segseg
Sequence: FF536789_4_ORF2  Length: 57 aa
No hits reported.
Sequence: FF536789_5_ORF1  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[3-14]? NA seg segseg
Sequence: FF536789_6_ORF2  Length: 55 aa
No hits reported.
Sequence: FF536789_6_ORF3  Length: 60 aa
noIPR
unintegrated
unintegrated
seg[25-38]? NA seg segseg