Home > Keyword search > DV448840

Summary
Sequence ID DV448840
Sequence Length 254 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_017889 (DV448840)
 
 
Sequence
>DV448840
CTTTGCTGGCGATATTTGGAGCTTTGGGGTAAGCACATTGGAGTTTTTTCTAGGGAGGTTTCCGTTTGCAGTTGGGCGGC
AGGNNNNTTGGGCAAGCTTCGATTTGTGCCATTTGTATGTCGCAACCACCTGAGGCTCCGCCTACCGCTTCCAGAGACTT
TCGGGAATTTATTGCTTTGTCTGCAAAGAGAGCCGGCGCCAAGGTGGACTCCCAATCAGTTGTTACNNCATCCCTTTATA
ACAAGGAACAATGG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  dbj|BAC81698.1| mitogen-activated protein kinase kinase [Solanum tuberosum] 62.0 3e-15
  Manihot esculenta blastn  cassava4.1_010555m|PACid:17966997 402 1e-112
  FGENESH CDS blastn  scaffold09974_FGENESH2 1 exon (s) 15098 - 16171 1074 bp, chain - 402 1e-112
  Arabidopsis thaliana blastx  AT3G21220.1 | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5, ATMEK5, MEK5 | MAP kinase kinase 5 | chr3:7445917-7446963 FORWARD LENGTH=348 57.4 9e-14
  Populus trichocarpa blastx  POPTR_0008s01030.1|PACid:18248965 58.5 9e-17
  Vitis vinifera blastx  GSVIVT01016115001|PACid:17826627 60.1 2e-15
  Ricinus communis blastx  29748.m000383|PACid:16807778 58.9 4e-15
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: DV448840_1_ORF1  Length: 85 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[60-79]T 0.006 PD000001 Q6QMT4_PETCR_Q6QMT4;Q6QMT4_PETCR_Q6QMT4;
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[3-81]T 0.00068 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
PTHR22986[60-85]T 1e-05 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF31[60-85]T 1e-05 PTHR22986:SF31 MITOGEN ACTIVATED PROTEIN KINASE KINASEMITOGEN ACTIVATED PROTEIN KINASE KINASE
Sequence: DV448840_3_ORF2  Length: 67 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[17-50]T 3e-08 PD000001 Q7XAC9_SOLTU_Q7XAC9;Q7XAC9_SOLTU_Q7XAC9;
noIPR
unintegrated
unintegrated
PTHR22986[17-41]T 3.2e-08 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF31[17-41]T 3.2e-08 PTHR22986:SF31 MITOGEN ACTIVATED PROTEIN KINASE KINASEMITOGEN ACTIVATED PROTEIN KINASE KINASE
seg[1-14]? NA seg segseg
Sequence: DV448840_5_ORF2  Length: 61 aa
No hits reported.
Sequence: DV448840_6_ORF2  Length: 60 aa
noIPR
unintegrated
unintegrated
seg[21-32]? NA seg segseg