Home > Keyword search > DV444525

Summary
Sequence ID DV444525
Sequence Length 517 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_016778 (DV444525)
 
 
Sequence
>DV444525
GGAANNNNNTATTGTCTGCTGGAAATATTTTCATGATGGGTCTGCTNNNNNGGCTAAGGAAGTAATTGAAACCATAGATG
ATGTGAATTTGTTAATCGTCTTCAAAGTGATCGAAGGAGATTTGTTGGAAGAATTTAAGAATTTCAAGGTGACCGTTCAA
GTTACGCCTAAAGGAGAGGGCAGTGTGGTGCGTTGGACCTTAGAATATGAGAAGATCCATGAGAATATACCAGATCCTTA
CTCCTTGCTAGAGATTATTGTCCAAAATAGTAAGGATGTTTCTGCTCATCTCGTGAAATGTCAGAACAAATGATCATGGA
ACATGTTATGCTCTAATATGTGGTTTGCATAATAATTAAATAAGTGCTTTATAATGAAGCACCAATGACAATGCATCTTT
GCATATAAACTTGTATCTATAGGACAATGCATCTTTGCATATGAACTTGTATCTATAATGCATATGAACTTGTATCAGTA
ACGTTTTAAACCTTAAAACTATGTCTGTGTGTTTTTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002534267.1| Major latex protein, putative [Ricinus communis] gb|EEF28116.1| Major latex protein, putative [Ricinus communis] 133 1e-29
  Manihot esculenta blastn  cassava4.1_018267m|PACid:17989448 573 1e-163
  FGENESH CDS blastn  scaffold03169_FGENESH5 2 exon (s) 34460 - 35000 420 bp, chain + 470 1e-132
  Arabidopsis thaliana blastx  AT1G70850.3 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715429-26716744 REVERSE LENGTH=316 107 3e-24
  Populus trichocarpa blastx  POPTR_0010s12110.1|PACid:18241894 120 6e-28
  Vitis vinifera blastx  GSVIVT01011719001|PACid:17823515 100 3e-22
  Ricinus communis blastx  29947.m000052|PACid:16814350 133 5e-32
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: DV444525_2_ORF1  Length: 103 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[20-96]T 3e-10 PD000531 Q8L9L8_ARATH_Q8L9L8;Q8L9L8_ARATH_Q8L9L8;
PF00407[1-100]T 8.7e-15 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[5-102]T 2.2e-26 G3DSA:3.30.530.20 no descriptionno description
SSF55961[18-100]T 9.4e-29 SSF55961 Bet v1-likeBet v1-like
Sequence: DV444525_4_ORF2  Length: 57 aa
No hits reported.
Sequence: DV444525_5_ORF1  Length: 53 aa
No hits reported.