Home > Keyword search > Contig10737

Summary
Sequence ID 
Sequence Length 704 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012850 (Contig10737)
 
 
Sequence
>Contig10737
ATATATCTTTTCCAAAAGCCATATCATGGGTGTTTTAACTTTTGAGAAGGAATTGGCTACTGCAATCCCTCCGGCCAAGA
TGTTCAAGGTCTTTGTCCTTGAAGGTGACACTGCCATCCCTACCATTTTGCCTGAGGTTGTTAAGAGTGTGGAGATCATT
GAAGGAAATGGAGGACCTGGCACCATTAAGAAGACTACCTTTGCGGAAGGTACCCAACACAAGTATATTAAGACCAAGCT
TGAAGCAGTGGACAAAGATAATTTCAAGCACAGCTACAGTGTGATTGAAGGTGAGCCATGGATGGATGCCATAGACAAAA
TTTCATATGAGACACAACTAGTGGCATCTCCTGATGGAGGATCTATTATTAAGAGCATCACCAAGTACTTCCCAAAGGGA
AACAGTGAAATCAATGAAGATGAAGTCAAGGCTGGAGCAGAGAAGGGCTTGGGATTGTTTAAAACCGTGGAAGCCTACCT
CTTGGCAAATCCTCATGCTTATAACTAAATATCGTGTCTCAGAGTCAACAAGCGGCTATCGCCGGCCTATCCTCTTTTAC
CCTTTTTTTACTTTAAAGGTCAAACTACTTTCGGCCCGACAATAAAAGTGTAGTGGTTATAGTACAATGTAATGGACTGC
AATTAAGTTTTTGTTTCAATCAAACCATGGGAATGAAAAGAAATAATTTAAATCTTAAAAANNN

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002516994.1| Major allergen Pru ar, putative [Ricinus communis] gb|EEF45608.1| Major allergen Pru ar, putative [Ricinus communis] 238 5e-61
  Manihot esculenta blastn  cassava4.1_018033m|PACid:17962226 942 0.0
  FGENESH CDS blastn  scaffold01551_FGENESH457 2 exon (s) 3013858 - 3014412 483 bp, chain + 942 0.0
  Arabidopsis thaliana blastx  AT1G24020.2 | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155 62.8 2e-10
  Populus trichocarpa blastx  POPTR_0008s23090.1|PACid:18247791 187 5e-48
  Vitis vinifera blastx  GSVIVT01035071001|PACid:17840333 208 2e-54
  Ricinus communis blastx  29726.m004117|PACid:16806827 238 2e-63
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: Contig10737_2_ORF1  Length: 168 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[20-159]T 2e-44 PD000531 Q9ZRU8_FAGSY_Q9ZRU8;Q9ZRU8_FAGSY_Q9ZRU8;
PR00634[11-31]T 6.8e-40 PR00634 BETALLERGEN[34-44]T 6.8e-40 PR00634 BETALLERGEN[58-67]T 6.8e-40 PR00634 BETALLERGEN[74-93]T 6.8e-40 PR00634 BETALLERGEN[93-106]T 6.8e-40 PR00634 BETALLERGEN[118-134]T 6.8e-40 PR00634 BETALLERGEN[152-162]T 6.8e-40 PR00634 BETALLERGENBETALLERGEN
PF00407[9-163]T 2.7e-35 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[10-166]T 2.6e-51 G3DSA:3.30.530.20 no descriptionno description
SSF55961[10-168]T 3.4e-49 SSF55961 Bet v1-likeBet v1-like
Sequence: Contig10737_3_ORF2  Length: 81 aa
noIPR
unintegrated
unintegrated
seg[7-21]? NA seg segseg
Sequence: Contig10737_3_ORF3  Length: 87 aa
No hits reported.
Sequence: Contig10737_4_ORF2  Length: 66 aa
No hits reported.
Sequence: Contig10737_4_ORF3  Length: 91 aa
No hits reported.
Sequence: Contig10737_5_ORF2  Length: 65 aa
No hits reported.
Sequence: Contig10737_5_ORF3  Length: 95 aa
No hits reported.