Home > Keyword search > Contig09240

Summary
Sequence ID 
Sequence Length 1573 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold08342
Related probe ID of RIKEN ver.1 microarray  R_Mes01_006392 (Scaffold08342)
 
 
Sequence
>Contig09240
ACCCTTNNNNNTCAACTCAGCCATTCTATACTTTTCTCCTCTCTTACCAAACCCCTCCTCAGCCTTCTCTCCCACCCAAA
TCCAAACCCCAGTCACCGATCACACCTCATTTGCTACTCGCTATGGCTTTAGCAAAATTCACTTCCTCTTCTAGGTCCAA
TCTCCTAAAACCCCTCACCACCGTCTTTTCCACCTCGGATTCTTTCCGCCGTCCGATCTCCACCTCCACCGACCCCCTCA
CTATCGAGACTTCCGTACCTTTCACTTCTCACAAATGCGAGCCTCCTTCCCGCTCCGTTGAGACTACTCCCCAAGAGCTC
ATTTCTTTCTTCAAGGACATGGCTATGATGCGCCGGATGGAGATCGCCGCCGACTCTCTCTACAAGGCCAAGCTTATCCG
CGGGTTCTGTCACCTCTACGACGGCCAGGAAGCTGTGGCTGTTGGGATGGAAGCAGCTATAACTAAAAAGGATAGCATCA
TAACAGCATACCGGGACCACTGCACTTTCGTCGGCCGCGGTGGGACACTCCTGGAGGTCTTTGCGGAGCTCATGGGACGC
CAGGCTGGGTGTTCGAAAGGGAAGGGTGGGTCAATGCATTTCTACAAGAAGGAAGCAGGGTTTTATCGATGACACGGGAT
CGTGGGAGCTCAGGTTCCACTAGGATGTGGATTGGCATTCGCCCAGAAGTATTCCAACGACGAGACTGTGACGTTTGCTT
TATACGGAGATGGTGCCGCCAATCAAGGGCAGTTGTTCGAGGCGCTTAATATTTCTGCTCTTTGGGATCTGCCTGTCATT
TTGGTCTGCGAGAACAATCACTATGGTATGGGGACGGCGGAGTGGAGAGCCGCTAAGAGTCCCGCTTACTACAAGCGTGG
GGATTACGTTCCTGGCCTGAAGGTGGATGGCATGGATGCTCTTGCTGTGAAACAAGCATGCAAATTCGCCAAGGAGCATG
TCTTAAGGGATGGGCCAATTATACTTGAAATGGATACCTACAGATATCATGGTCACTCCATGTCTGATCCTGGAAGTACC
TACCGTACTCGTGATGAGATTAGTGGCGTGAGACAGGAACGTGATCCCATTGAAAGGATAAGAAAAGTGATATTAGCTTA
TGATCTGGCTACAGAGAAAGAGCTAAAGGATTTTGAGAAAGAAATACGAAAAGAAGTAGATGAAGCCATTGCTCAAGCGA
AGGAAAGTCCGATGCCAGAACCCTCTGAACTTTTTACAAATGTGTATGTGAAAGGTCTGGGAACTGAGGCATTTGGAGCA
GATAGGAAAGAAGTTAGAGCTGTGCTTCCATAACCGAATATATGCAGAAAGTGTTGAACAAACCCCACCTCAAAACCCTT
TTTACGCTGCAAAAATCATCCAAAAAGGATAGCAAATAAATATTAGCAAAGATGGGAATCTCTTGCAGGCAAAAGATTTT
GTTTTCACAATTTGTATAGAATACTGATTCTTCTCAAGTTGTGGGGTGGAATTGTGTGTACTTTTCTTGAAAGAAGCTAC
GGTTGGATATAAAGAGGTCACCAATGTGCTCTGAGATGCAAGAAAATTCATTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002520198.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF42253.1| pyruvate dehydrogenase, putative [Ricinus communis] 723 0.0
  Manihot esculenta blastn  cassava4.1_007540m|PACid:17993625 2498 0.0
  FGENESH CDS blastn  scaffold04209_FGENESH40 8 exon (s) 375314 - 379604 1191 bp, chain + 2298 0.0
  Arabidopsis thaliana blastx  AT1G59900.1 | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydrogenase complex E1 alpha subunit | chr1:22051368-22053660 FORWARD LENGTH=389 661 0.0
  Populus trichocarpa blastx  POPTR_0010s04790.1|PACid:18240850 701 0.0
  Vitis vinifera blastx  GSVIVT01020139001|PACid:17829615 355 4e-98
  Ricinus communis blastx  29736.m002097|PACid:16807202 723 0.0
 
 
Gene Ontology 
InterProScan
GO:0008152
Biological Process
metabolic process
 
 
InterProScan result 
detail
Sequence: Contig09240_1_ORF2  Length: 59 aa
noIPR
unintegrated
unintegrated
seg[12-34]? NA seg seg[39-48]? NA seg segseg
Sequence: Contig09240_1_ORF3  Length: 59 aa
No hits reported.
Sequence: Contig09240_1_ORF4  Length: 62 aa
No hits reported.
Sequence: Contig09240_2_ORF1  Length: 50 aa
No hits reported.
Sequence: Contig09240_2_ORF2  Length: 54 aa
No hits reported.
Sequence: Contig09240_2_ORF3  Length: 97 aa
No hits reported.
Sequence: Contig09240_3_ORF1  Length: 209 aa
InterPro
IPR001017
Domain
Dehydrogenase, E1 component
PF00676[111-208]T 3.2e-45 PF00676 E1_dhE1_dh
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[71-208]T 8.8e-30 G3DSA:3.40.50.970 no descriptionno description
PTHR11516[89-208]T 1.5e-82 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)
PTHR11516:SF4[89-208]T 1.5e-82 PTHR11516:SF4 PYRUVATE DEHYDROGENASE E1 COMPONENT ALPHA SUBUNIT, MITOCHONDRIALPYRUVATE DEHYDROGENASE E1 COMPONENT ALPHA SUBUNIT, MITOCHONDRIAL
seg[12-32]? NA seg segseg
SSF52518[99-208]T 3.6e-26 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig09240_3_ORF2  Length: 226 aa
InterPro
IPR001017
Domain
Dehydrogenase, E1 component
PF00676[1-198]T 1.3e-68 PF00676 E1_dhE1_dh
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[1-205]T 4.4e-72 G3DSA:3.40.50.970 no descriptionno description
PTHR11516[1-226]T 2.5e-170 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)
PTHR11516:SF4[1-226]T 2.5e-170 PTHR11516:SF4 PYRUVATE DEHYDROGENASE E1 COMPONENT ALPHA SUBUNIT, MITOCHONDRIALPYRUVATE DEHYDROGENASE E1 COMPONENT ALPHA SUBUNIT, MITOCHONDRIAL
SSF52518[1-207]T 2.6e-67 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig09240_4_ORF2  Length: 59 aa
No hits reported.
Sequence: Contig09240_4_ORF3  Length: 71 aa
No hits reported.
Sequence: Contig09240_5_ORF2  Length: 60 aa
No hits reported.
Sequence: Contig09240_5_ORF3  Length: 61 aa
No hits reported.
Sequence: Contig09240_5_ORF4  Length: 53 aa
No hits reported.
Sequence: Contig09240_6_ORF1  Length: 69 aa
No hits reported.
Sequence: Contig09240_6_ORF2  Length: 68 aa
No hits reported.
Sequence: Contig09240_6_ORF3  Length: 80 aa
No hits reported.
Sequence: Contig09240_6_ORF4  Length: 141 aa
noIPR
unintegrated
unintegrated
seg[119-124]? NA seg segseg