Home > Keyword search > Contig08637

Summary
Sequence ID 
Sequence Length 606 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_011439 (Contig08637)
 
 
Sequence
>Contig08637
TAACATTTGATCCCACCAGAAGAATTTCTGTTGAAGAAGCATTAGCGCATCCGTACCTGGCAAGGTTACATGATGTAGCT
GATGAACCAGTGTGCCCAGTTCCATTCACTTTTGATTTTGAGCAACAGCCCTTGGGAGAAGAACAGATGAAGGAAATGAT
TTACAGAGAGGCTTTAGCACTCAATCCTGAGTATGCATAATGGAGAAAGTAGATATGTTACTTGGTATAATATTCATTTA
TTGTTCAAATGTTGTTTGATAGAAAAGAGCTGTGGATGAAACAATGCAACCCTAAGAGAGAAATCATGTTGAACAACAAG
GCGGGTTACCGATCAAACAAGTCAAATCCCTCTGTTTGATTGTCTTCTGTCCTTGTCACGGGCGTGCTGATTTTGCACCC
ATCACTACCCATCAGCTGTACACTACCTTACAATGTTAGTAACCTTACAGCCTTCATATGACTAAGAATTTCTTTTATTT
TTCTCACTTCCTCTTGTAAGATTTGCTGATTTGTGATTTTTTTTTTTTTTTGAAATTTGAACTATTCTCAATGTAGTTAA
TGCTTATTGTGTGCAATAGATTGAATACAAATGTAAACTGTTGCTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002532266.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF30132.1| big map kinase/bmk, putative [Ricinus communis] 129 4e-28
  Manihot esculenta blastn  cassava4.1_010219m|PACid:17991685 396 1e-110
  FGENESH CDS blastn  scaffold00506_FGENESH14 6 exon (s) 136535 - 139831 1176 bp, chain - 396 1e-110
  Arabidopsis thaliana blastx  AT3G45640.1 | Symbols: ATMPK3, MPK3, ATMAPK3 | mitogen-activated protein kinase 3 | chr3:16756918-16758476 FORWARD LENGTH=370 102 1e-22
  Populus trichocarpa blastx  POPTR_0001s27860.1|PACid:18234559 121 3e-28
  Vitis vinifera blastx  GSVIVT01025105001|PACid:17833161 111 3e-25
  Ricinus communis blastx  29688.m000269|PACid:16805869 129 1e-30
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig08637_3_ORF1  Length: 65 aa
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-50]T 1.8e-05 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
PD054205[23-58]T 4e-12 PD054205 Q9LKZ2_CAPAN_Q9LKZ2;Q9LKZ2_CAPAN_Q9LKZ2;
Sequence: Contig08637_5_ORF2  Length: 53 aa
noIPR
unintegrated
unintegrated
seg[6-17]? NA seg segseg