Home > Keyword search > Contig05825

Summary
Sequence ID 
Sequence Length 1252 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06990
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005482 (Scaffold06990)
 
 
Sequence
>Contig05825
GGGAGGGCCTTTTCGTCCTCTAACCTCAGGGGCTTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTGGAATCTC
ATTAGAATTATACTTCAGCATCTCTATCTCTATCTCTATCTTTGCATTTCTTTCTCTTCTTTTCCCCTTTAGATTTGTAC
AAATTTCAGATTGTTTTTCATTAGATTAGATTAGCAGAAACAGTTAGATCACCATGACTTCACTCATTAACATTGACGCT
TCCCAGCTACCCACCGCTCTTTCCCATTTAGCCATTCAAGATCAGGGGGAAGTAGAAACTAAGATGGAGATTCATGAAAA
ACCTTGTGGGAATCATGGTGGAGTTTGTGCGATATGCTTGGATAAGATTGTGCTTCAGGAAACTGCTCTTATAAAAGGTT
GTGAGCACGCCTACTGTGTGATGTGTATCCTTCGATGGGCCACGTACAGTGAGAAGCCAACTTGTCCTCAGTGCAAATGT
CCATTTGAGTTTCTTAACGTTCATCGTTCTCTTGATGGCAGCATCCTGGATTATATGTTTGAAGAAAGTGTGTGCCTCCT
GCTTAGAGCTGCATGGTTTAAACCTCTGATTGTAGAGGATTATCGTGAAGATGTTTATGATGATTTGGAGGATTATTATC
CATATGGATATGAGGATGATGAGGATGATTTAGATGAAGTTTACTTAAGCCGTTCATCAAACCTTCGTATTGGTAATCGG
AGGTGGGGAGACAATGGGTATGTTAGGGCGGGGCGTCAAGAAGCCAGGCCAGTTTATCGACCGAACAGCCAGGACTCAGG
TGCTGGTTCATCACGCGAACCAACTAAGAAAGAGGCTACAAAGGATAGAACTGGCCGACGTGCAAAGAGGACTCTCAAGC
GCGAAGCTGCTGACAAGGCGGCTGCAGCCAAACATCAGCAGCATTTGGCAAGGTTGGGCCGGATGTGATTCTGTGTCTGT
ATATCTCCCCTGGATGTATTTAGTTCATAATCCAGAAACTATGCATCTGGTCTTTGTACAGTGTTTCCTTTCCTCTTTAA
CTTTGTGAAATAATGATATGACATGGTAGTAGATAAGGCATCATGGGGTAAACTGGGTGGTTTATCATTCAAAATTTAGA
CCTTCAAAGATTCAAAACACCTCGGAATCTGGTTATGAATCACTCTTGTTATTCATTTGGAAGCTTTCCTTGATGTCCAT
CCCAGCTCAATATGGGAACTAACTAGGCGTTTCTTAACGATTTTCAGGTTGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002530900.1| protein binding protein, putative [Ricinus communis] gb|EEF31476.1| protein binding protein, putative [Ricinus communis] 417 1e-114
  Manihot esculenta blastn  cassava4.1_014883m|PACid:17981961 1457 0.0
  FGENESH CDS blastn  scaffold06916_FGENESH149 4 exon (s) 1150878 - 1153933 735 bp, chain - 1457 0.0
  Arabidopsis thaliana blastx  AT5G19430.1 | Symbols: | RING/U-box superfamily protein | chr5:6553998-6555616 FORWARD LENGTH=255 285 5e-77
  Populus trichocarpa blastx  POPTR_0001s28270.1|PACid:18234594 377 1e-104
  Vitis vinifera blastx  GSVIVT01037269001|PACid:17841954 350 8e-97
  Ricinus communis blastx  27742.m000248|PACid:16799047 417 1e-117
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig05825_1_ORF1  Length: 62 aa
noIPR
unintegrated
unintegrated
seg[5-50]? NA seg segseg
Sequence: Contig05825_1_ORF2  Length: 246 aa
InterPro
IPR001841
Domain
Zinc finger, RING-type
PF00097[47-89]T 4.6e-09 PF00097 zf-C3HC4zf-C3HC4
SM00184[47-89]T 1.2e-05 SM00184 no descriptionno description
PS50089[47-90]T 12.401 PS50089 ZF_RING_2ZF_RING_2
PS00518[65-74]T 8e-5 PS00518 ZF_RING_1ZF_RING_1
InterPro
IPR013083
Domain
Zinc finger, RING/FYVE/PHD-type
G3DSA:3.30.40.10[40-111]T 5.6e-08 G3DSA:3.30.40.10 no descriptionno description
noIPR
unintegrated
unintegrated
PTHR22764[46-100]T 0.00015 PTHR22764 RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).
PTHR22764:SF1[46-100]T 0.00015 PTHR22764:SF1 gb def: Hypothetical protein At2g28920gb def: Hypothetical protein At2g28920
seg[137-160]? NA seg seg[227-241]? NA seg segseg
SSF57850[40-111]T 1.8e-12 SSF57850 RING/U-boxRING/U-box
Sequence: Contig05825_2_ORF2  Length: 55 aa
No hits reported.
Sequence: Contig05825_2_ORF3  Length: 119 aa
noIPR
unintegrated
unintegrated
seg[11-22]? NA seg segseg
Sequence: Contig05825_4_ORF2  Length: 57 aa
No hits reported.
Sequence: Contig05825_4_ORF3  Length: 133 aa
noIPR
unintegrated
unintegrated
seg[1-25]? NA seg segseg
Sequence: Contig05825_5_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[23-42]? NA seg segseg
Sequence: Contig05825_6_ORF2  Length: 60 aa
noIPR
unintegrated
unintegrated
seg[36-59]? NA seg segseg