Sequence ID |
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Sequence Length | 1252 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold06990 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_005482 (Scaffold06990) |
>Contig05825 GGGAGGGCCTTTTCGTCCTCTAACCTCAGGGGCTTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTGGAATCTC ATTAGAATTATACTTCAGCATCTCTATCTCTATCTCTATCTTTGCATTTCTTTCTCTTCTTTTCCCCTTTAGATTTGTAC AAATTTCAGATTGTTTTTCATTAGATTAGATTAGCAGAAACAGTTAGATCACCATGACTTCACTCATTAACATTGACGCT TCCCAGCTACCCACCGCTCTTTCCCATTTAGCCATTCAAGATCAGGGGGAAGTAGAAACTAAGATGGAGATTCATGAAAA ACCTTGTGGGAATCATGGTGGAGTTTGTGCGATATGCTTGGATAAGATTGTGCTTCAGGAAACTGCTCTTATAAAAGGTT GTGAGCACGCCTACTGTGTGATGTGTATCCTTCGATGGGCCACGTACAGTGAGAAGCCAACTTGTCCTCAGTGCAAATGT CCATTTGAGTTTCTTAACGTTCATCGTTCTCTTGATGGCAGCATCCTGGATTATATGTTTGAAGAAAGTGTGTGCCTCCT GCTTAGAGCTGCATGGTTTAAACCTCTGATTGTAGAGGATTATCGTGAAGATGTTTATGATGATTTGGAGGATTATTATC CATATGGATATGAGGATGATGAGGATGATTTAGATGAAGTTTACTTAAGCCGTTCATCAAACCTTCGTATTGGTAATCGG AGGTGGGGAGACAATGGGTATGTTAGGGCGGGGCGTCAAGAAGCCAGGCCAGTTTATCGACCGAACAGCCAGGACTCAGG TGCTGGTTCATCACGCGAACCAACTAAGAAAGAGGCTACAAAGGATAGAACTGGCCGACGTGCAAAGAGGACTCTCAAGC GCGAAGCTGCTGACAAGGCGGCTGCAGCCAAACATCAGCAGCATTTGGCAAGGTTGGGCCGGATGTGATTCTGTGTCTGT ATATCTCCCCTGGATGTATTTAGTTCATAATCCAGAAACTATGCATCTGGTCTTTGTACAGTGTTTCCTTTCCTCTTTAA CTTTGTGAAATAATGATATGACATGGTAGTAGATAAGGCATCATGGGGTAAACTGGGTGGTTTATCATTCAAAATTTAGA CCTTCAAAGATTCAAAACACCTCGGAATCTGGTTATGAATCACTCTTGTTATTCATTTGGAAGCTTTCCTTGATGTCCAT CCCAGCTCAATATGGGAACTAACTAGGCGTTTCTTAACGATTTTCAGGTTGC |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002530900.1| protein binding protein, putative [Ricinus communis] gb|EEF31476.1| protein binding protein, putative [Ricinus communis] | 417 | 1e-114 |
Manihot esculenta | blastn | cassava4.1_014883m|PACid:17981961 | 1457 | 0.0 |
FGENESH CDS | blastn | scaffold06916_FGENESH149 4 exon (s) 1150878 - 1153933 735 bp, chain - | 1457 | 0.0 |
Arabidopsis thaliana | blastx | AT5G19430.1 | Symbols: | RING/U-box superfamily protein | chr5:6553998-6555616 FORWARD LENGTH=255 | 285 | 5e-77 |
Populus trichocarpa | blastx | POPTR_0001s28270.1|PACid:18234594 | 377 | 1e-104 |
Vitis vinifera | blastx | GSVIVT01037269001|PACid:17841954 | 350 | 8e-97 |
Ricinus communis | blastx | 27742.m000248|PACid:16799047 | 417 | 1e-117 |
InterProScan |
No hits found |
Sequence: Contig05825_1_ORF1 Length: 62 aa | |||||||
noIPR unintegrated |
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Sequence: Contig05825_1_ORF2 Length: 246 aa | ||||||||||||||||
InterPro IPR001841 Domain |
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InterPro IPR013083 Domain |
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noIPR unintegrated |
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Sequence: Contig05825_2_ORF2 Length: 55 aa | |
No hits reported. |
Sequence: Contig05825_2_ORF3 Length: 119 aa | |||||||
noIPR unintegrated |
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Sequence: Contig05825_4_ORF2 Length: 57 aa | |
No hits reported. |
Sequence: Contig05825_4_ORF3 Length: 133 aa | |||||||
noIPR unintegrated |
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Sequence: Contig05825_5_ORF2 Length: 54 aa | |||||||
noIPR unintegrated |
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Sequence: Contig05825_6_ORF2 Length: 60 aa | |||||||
noIPR unintegrated |
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