Home > Keyword search > Contig05776

Summary
Sequence ID 
Sequence Length 1687 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06924
 Scaffold06925
 Scaffold06926
 Scaffold06927
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005435 (Scaffold06924)
 - (Scaffold06925)
 - (Scaffold06926)
 - (Scaffold06927)
 
 
Sequence
>Contig05776
GGTGGAGTTAAAAATACGCCCCCCAAAGAAGAATTGTCAAACACTAAGCACCTACCGCACCCACCCCCCTCCCCAACTAA
TAAGCTCAGGAGTCGGGTCCGGTTTCGGATCATCCGAGTTCACTGCCGCGTCAATGGAGTCGAGCTCTGGCTCCGGCGAG
CACAACGTCAGAGGAATACCTACTCACGGTGGACGCTACGTGCAGTATAATGTGTACGGCAACCTCTTTGAAGTATCTAG
AAAGTATGTCCCTCCTATTCGCCCTGTTGGCCGAGGTGCTTATGGTATTGTTTGTGCTGCTATCAATTCCGAGACACGGG
AGGAAGTTGCCATTAAGAAGATTGGTAATGCTTTTGACAACCGGATAGATGCTAAAAGGACTCTGCGAGAGATTAAGCTT
CTTCGACACATGAGCCATGAAAATATTATTGCTCTTAGAGATATCATACGACCTCCTCAGAAGGAGAACTTCAATGATGT
TTACATTGTTTATGAACTGATGGACACTGATCTTCATCAAATAATTCGCTCTAACCAACCATTGACAGATGATCATTGTC
GGTATTTTCTCTATCAGTTGCTGCGAGGGCTCAAATATGTACATTCAGCACATGTGTTGCATCGTGATCTAAAGCCTAGC
AATCGTCTTCTGAATGCTAATTGCAACCTCAAGATTGCAGACTTTGGTCTTGCAAGGACAACATCTGAAACTGATTTTAT
GACCGAGTATGTTGTTACTCGCTGGTATCGGGCGCCAGAATTACTTCTTAATTGTTCTGAGTACACAGCAGCGATTGATA
TATGGTCAGTGGGTTGTATACTTGGTGAAATCATGACTAGACAACCCTTGTTTCCTGGTAAAGACTATGTTCATCAGTTG
AGGCTTATCACAGAGCTCATTGGTTCACCAGATGACGCCAGCCTTGGTTTCCTACGGAGTGAGAATGCTCGCAGATATGT
TAGGCAGCTTCCTCAATACCCAAGGCAAAATTTTACTGCTAGATTTCCTAATATGTCTGCAGGTGCTGTCAATCTGCTCG
AGGAGATGCTAGTCTTTGATCCAAACAGGCGCATTACAGTTGACGCGGCGTTGTGCCACCCGTACTTGGCACCTCTCCAC
GATATCAACGAGGAGCCTGTTTGCCCAAGGCCTTTCAACTTTGATTTTGAGCAGCCAACATTTACCGAGGAAAACATCAA
GGAGCTCATCTGGAGGGAATCAGCAAAATTCAATCCGGATCCTTGAGAATTATCTGATAGTCTTTTGTACACGGGAAAAT
ACTCACATTACTCCCATCTTCATCATAATTATATAGAACCTGTCAAGAGTTCTAGGGAAAGAAGAAAAGAACTCCATGGG
TATGTTGGGATTCACTCACGCCACGGACTGTTGATTCCTTTTATCTCGAATCATTTATGATATCGAAGTGTGTGAAATGG
AGGCTAGGTTTTCTTTAAGGTAACTGAGAAGAATCTCTATGAAAGTTAAATTTGTAATTTGTGTATATGGGCAAACCAAT
TGATTTGGGTGGATGGAGTGGCTGTTGTACTGGCAATCTCTTCCGTTCTGGAATGGGGATTTTGCATGGATCTGAGACCT
AATTTCCCTTTCTTTTCCTTAAAAGTTTCTGAAAATTGATTTGAATGTGTAGAATTTCTTTGATATGCGAGGCTTATATG
TTTACCC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002511904.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF50573.1| big map kinase/bmk, putative [Ricinus communis] 713 0.0
  Manihot esculenta blastn  cassava4.1_010005m|PACid:17975589 2159 0.0
  FGENESH CDS blastn  scaffold03581_FGENESH159 7 exon (s) 1234276 - 1239094 1161 bp, chain + 1590 0.0
  Arabidopsis thaliana blastx  AT4G01370.1 | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 672 0.0
  Populus trichocarpa blastx  POPTR_0002s16400.1|PACid:18245680 698 0.0
  Vitis vinifera blastx  GSVIVT01026984001|PACid:17834523 704 0.0
  Ricinus communis blastx  30174.m008647|PACid:16822293 713 0.0
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
detail
Sequence: Contig05776_1_ORF1  Length: 69 aa
No hits reported.
Sequence: Contig05776_2_ORF1  Length: 414 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[86-335]T 4e-127 PD000001 Q6T6J8_MAIZE_Q6T6J8;Q6T6J8_MAIZE_Q6T6J8;
PS50011[83-369]T 44.838 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
SM00219[83-369]T 1.3e-12 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[83-369]T 2.4e-91 SM00220 no descriptionno description
InterPro
IPR003527
Conserved_site
MAP kinase, conserved site
PS01351[118-221]? NA PS01351 MAPKMAPK
InterPro
IPR008351
Family
JNK MAP kinase
PR01772[133-142]T 4.4e-06 PR01772 JNKMAPKINASE[193-204]T 4.4e-06 PR01772 JNKMAPKINASE[231-241]T 4.4e-06 PR01772 JNKMAPKINASE[292-304]T 4.4e-06 PR01772 JNKMAPKINASE[321-337]T 4.4e-06 PR01772 JNKMAPKINASEJNKMAPKINASE
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[74-414]T 3.2e-89 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017441
Conserved_site
Protein kinase ATP binding, conserved site
PS00107[89-113]T 8e-5 PS00107 PROTEIN_KINASE_ATPPROTEIN_KINASE_ATP
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[83-369]T 5.2e-89 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
PD054205[373-410]T 1e-14 PD054205 Q8GZR5_MALMI_Q8GZR5;Q8GZR5_MALMI_Q8GZR5;
G3DSA:1.10.510.10[153-405]T 9e-69 G3DSA:1.10.510.10 no descriptionno description
G3DSA:3.30.200.20[76-153]T 0.00021 G3DSA:3.30.200.20 no descriptionno description
PTHR11295[52-300]T 1.8e-188 PTHR11295 CDC2, MAP KINASE-RELATEDCDC2, MAP KINASE-RELATED
PTHR11295:SF69[52-300]T 1.8e-188 PTHR11295:SF69 MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATEDMITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATED
seg[28-38]? NA seg seg[42-53]? NA seg segseg
Sequence: Contig05776_2_ORF2  Length: 57 aa
No hits reported.
Sequence: Contig05776_3_ORF2  Length: 94 aa
No hits reported.
Sequence: Contig05776_3_ORF3  Length: 56 aa
No hits reported.
Sequence: Contig05776_3_ORF4  Length: 87 aa
noIPR
unintegrated
unintegrated
seg[49-62]? NA seg seg[79-87]? NA seg segseg
Sequence: Contig05776_4_ORF1  Length: 66 aa
No hits reported.
Sequence: Contig05776_4_ORF2  Length: 104 aa
No hits reported.
Sequence: Contig05776_4_ORF3  Length: 96 aa
noIPR
unintegrated
unintegrated
seg[65-81]? NA seg segseg
Sequence: Contig05776_4_ORF4  Length: 58 aa
No hits reported.
Sequence: Contig05776_5_ORF2  Length: 67 aa
No hits reported.
Sequence: Contig05776_5_ORF3  Length: 56 aa
No hits reported.
Sequence: Contig05776_5_ORF4  Length: 157 aa
noIPR
unintegrated
unintegrated
seg[102-116]? NA seg segseg