Home > Keyword search > Contig02423

Summary
Sequence ID 
Sequence Length 575 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold03076
 Scaffold03077
Related probe ID of RIKEN ver.1 microarray  R_Mes01_002363 (Scaffold03076)
 R_Mes01_002364 (Scaffold03077)
 
 
Sequence
>Contig02423
GGGCATACGCTTCTCTGGCTCTCTCTCGCTCTCTCTCTTGTCGGTGTTGAGATCTTGCAGCTTCTGCACTCTAAGCCATA
CACTACAGCTTCCTTGAAGGTTAAAAATAATATAAAAGAAAAAGAGATATGACAACTCTGGTCTAGGGTTTCTTAATTTA
TTTGGATCTGTACGCTAAGGCAGGCCGAAAGGTCGAGGAAATGCTAGAGTTATTGTTCTTGTTACTGGATTCTCGAGAGG
CGCTCGCTGATTTATGCTAACTTTTGTGGCGGGATTGTGGAACAAGGCGGAGGAGGTGGAGGTGCGTATGAGGGAATTGG
TTGTGGTGTGGATTTTTTGTGCGGTGGTGAAGGATTCGTGCAAGAGAATAGGGTTGAATTATGGGCTGTTCATAAGGAGC
AGGGGTAGGTGGGGCAAATGTGGTTGATTCTTTTTTCTTATTGTTGAGGTTTATTTTTCTTTCTTGTTTTGTTTTTATCT
CAACTGGCCGAATAGATTGTCGATTGNACAAACGGTTTTAAGTTTGGCGATTTTGAAAGGGAGAAAGAAAACAAAATGCA
GCAAGATCATTGGAA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx - - -
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx - - -
  Vitis vinifera blastx - - -
  Ricinus communis blastx - - -
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig02423_1_ORF2  Length: 66 aa
noIPR
unintegrated
unintegrated
seg[20-41]? NA seg segseg
Sequence: Contig02423_2_ORF2  Length: 58 aa
noIPR
unintegrated
unintegrated
seg[14-26]? NA seg segseg
Sequence: Contig02423_2_ORF3  Length: 49 aa
No hits reported.
Sequence: Contig02423_4_ORF2  Length: 67 aa
No hits reported.
Sequence: Contig02423_4_ORF3  Length: 58 aa
No hits reported.
Sequence: Contig02423_5_ORF2  Length: 86 aa
No hits reported.