Home > Keyword search > Contig01707

Summary
Sequence ID 
Sequence Length 653 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold02229
 Scaffold02230
 Scaffold02231
 Scaffold02232
 Scaffold02233
 Scaffold02234
Related probe ID of RIKEN ver.1 microarray  R_Mes01_001710 (Scaffold02229)
 R_Mes01_001711 (Scaffold02230)
 R_Mes01_001712 (Scaffold02231)
 R_Mes01_001713 (Scaffold02232)
 R_Mes01_001714 (Scaffold02233)
 R_Mes01_001715 (Scaffold02234)
 
 
Sequence
>Contig01707
GAAGCTTATTACATTGCTGCTTCTCTCTATAGAACAACAGCCGCCTCTCCTCTTCTTCTCTCTGTGAATATATTGTATAG
CTTTGCATTCTCTCTCTCCCTCTCTCTCACATTAGAGCCAATACACACTCATTTACTCCTTAATACAAGCAGAGTGCTCT
GTTTTTCATAAGCTTCATTCAAGCTGGCGATCGAAAATCAGGAAACCACTATCAAGCCTAGAAATAGGAGAATCATGGGT
GCCGGAGGACCTGAAGAAGACGACGACGACAACAGGTGGCCGAAGTGGCTAAGGCCTCTGCTAAAGGAGAGCTTCTTTGT
TCAATGCAAATTGCACGCTGATTCCCATAAAAGTGAATGTAATATGTATTGTATGGATTGCATGAATGGGGCTCTCTGCT
CCCTCTGCCTAGCCTACCACAAGGACCATCACGCTATTCAGATAAGGAGGTCCTCATACCATGATGTGATAAGGGTATCA
GAGATACAGAAGGTGCTGGACATATCTGGTGTCCAGACTTATGTGATCAACAGTGCGAGAGTTGTTTTCTTGAATGAAAG
GCCTCAGCCTAGGCCTGGCAAAGGTGTCACCAACACCTGCGATGTCTGCGAGCGAAGCCTTCTTGATTCCTTCCGTTTCT
GCTCCCTTGGCTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002277964.1| PREDICTED: hypothetical protein [Vitis vinifera] emb|CBI33878.3| unnamed protein product [Vitis vinifera] 293 2e-77
  Manihot esculenta blastn  cassava4.1_015881m|PACid:17968630 831 0.0
  FGENESH CDS blastn  scaffold08679_FGENESH2 5 exon (s) 60147 - 63059 756 bp, chain - 827 0.0
  Arabidopsis thaliana blastx  AT4G17900.1 | Symbols: | PLATZ transcription factor family protein | chr4:9946046-9947697 FORWARD LENGTH=227 268 2e-72
  Populus trichocarpa blastx  POPTR_0001s02390.1|PACid:18234742 291 2e-79
  Vitis vinifera blastx  GSVIVT01013149001|PACid:17824483 293 6e-80
  Ricinus communis blastx  30073.m002298|PACid:16816881 277 3e-75
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig01707_1_ORF1  Length: 56 aa
noIPR
unintegrated
unintegrated
seg[25-38]? NA seg segseg
Sequence: Contig01707_1_ORF2  Length: 160 aa
InterPro
IPR006734
Family
Protein of unknown function DUF597
PF04640[52-160]T 3.7e-75 PF04640 PLATZPLATZ
Sequence: Contig01707_2_ORF2  Length: 58 aa
noIPR
unintegrated
unintegrated
seg[47-55]? NA seg segseg
Sequence: Contig01707_4_ORF1  Length: 57 aa
No hits reported.
Sequence: Contig01707_5_ORF2  Length: 66 aa
No hits reported.