Home > Keyword search > CK644626

Summary
Sequence ID CK644626
Sequence Length 548 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_014324 (CK644626)
 
 
Sequence
>CK644626
GTCAGACGTGTACAGTTTTGGTGTCATATTGTGGGAGCTTGCAACACTGCAACAACCATGGAGCAATTTAAATCCTGCAC
AGGTTGTAGCCGCTGTTGGATTTAAAGGCAAGAGACTTGATATTCCACGGGATTTAAATCCTCAAGTTGCCATCATGATT
GAGGCTTGCTGGGCAAATGAGCCTTGGAAGCGGCCTTCCTTTACAAATATCATGGAATCTTTAAGGCTGTTGATCAAACC
TCCGACACCTCCAACTGGTCATGCAGAAATGCCATTACTTACCTGAGTAAGGTTGAACACCAGTGAAGTCTTCTTTTGTA
CACAGATGAACATTCTTTTGACATTTGACAAATGGAAGAGTGGTATTTTTTGATACTCTCAGAATCCCTGTTGTACTTGT
CTGTTCTCCTTGCCAATTGAGAATTCTAATTTTTAGCTCAACCTCAGGAATTGCACCAATACTTGCATTACCCTTCCTCT
GCTGCCAAAAAAATATTGTTTACTGTGATGGGAAAGTTGTATAAAGTTTTCTCTCATAATTTTGTATG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002528586.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF33794.1| map3k delta-1 protein kinase, putative [Ricinus communis] 173 9e-42
  Manihot esculenta blastn  cassava4.1_006043m|PACid:17971743 438 1e-122
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx  AT5G03730.1 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821 146 1e-35
  Populus trichocarpa blastx  POPTR_0016s11050.2|PACid:18251245 169 1e-42
  Vitis vinifera blastx  GSVIVT01033779001|PACid:17839429 170 3e-43
  Ricinus communis blastx  29092.m000453|PACid:16802274 173 4e-44
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
detail
Sequence: CK644626_2_ORF1  Length: 94 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[2-77]T 1e-23 PD000001 Q6YW44_EEEEE_Q6YW44;Q6YW44_EEEEE_Q6YW44;
PS50011[1-77]T 10.111 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
PF07714[1-74]T 3.9e-19 PF07714 Pkinase_TyrPkinase_Tyr
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-94]T 2.3e-16 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[1-85]T 4.6e-14 G3DSA:1.10.510.10 no descriptionno description
PTHR23257[1-94]T 3.9e-46 PTHR23257 SERINE-THREONINE PROTEIN KINASESERINE-THREONINE PROTEIN KINASE
PTHR23257:SF80[1-94]T 3.9e-46 PTHR23257:SF80 MAP3K DELTA-1 PROTEIN KINASEMAP3K DELTA-1 PROTEIN KINASE
Sequence: CK644626_3_ORF2  Length: 60 aa
No hits reported.
Sequence: CK644626_5_ORF2  Length: 74 aa
No hits reported.