Home > Keyword search > CAS01_045_L07.f

Summary
Sequence ID CAS01_045_L07.f (DB936267)
Sequence Length 587 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06927
Probe ID of RIKEN ver.1 microarray  -
 
 
Sequence
>CAS01_045_L07.f
GGTGGAGTTAAAAATTCGCCCCCCAAAGAAGAATTGTCAAACATTAAGCACCTACCGCACCCAGCCCCCTCCCCAACTAA
TAAGCTCAGGAGTCGGGTCCGGTTTCGGATCATCCGAGTTCACTGACGCGTCAATGGAGTCGAGCTCTGGCTCCGGCGAG
CACAACGTCAGAGGAATACCTACTCACGGTGGACGCTACGTGCAGTATAATGTGTACGGCAACCTCTTTGAAGTATCTAG
AAAGTATGTCCCTCCGATTCGCCCTGTTGGCCGAGGTGCTTATGGTATTGTTTGGAAGATGTGATTTTTTATTTCCTTCA
GTGCTGCTATCAATTCCGAGACACGGGAGGAAGTTGCCATTAAGAAGATTGGTAATGCTTTTGACAACCGGATAGATGCT
AAAAGGACTCTGCGAGAGATTAAGCTTCTTCGACACATGAGCCATGAAAATATTATTGCTCTTAGAGATATCATACGACC
TCCTCAGAAGGAGAACTTCAATGATGTTTACATTGTTTATGAACTGATGGACACTGATCTTCATCAAATAATTCGCTCTA
ACCAACCATTGACAGATGATCATTGTC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002277669.1| PREDICTED: hypothetical protein [Vitis vinifera] emb|CAN75543.1| hypothetical protein VITISV_000466 [Vitis vinifera] emb|CBI40425.3| unnamed protein product [Vitis vinifera] 259 2e-67
  Manihot esculenta blastn  cassava4.1_010005m|PACid:17975589 529 1e-150
  FGENESH CDS blastn  scaffold02658_FGENESH104 6 exon (s) 728416 - 732230 1119 bp, chain + 371 1e-102
  Arabidopsis thaliana blastx  AT4G01370.1 | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 236 1e-62
  Populus trichocarpa blastx  POPTR_0002s16400.1|PACid:18245680 255 1e-68
  Vitis vinifera blastx  GSVIVT01026984001|PACid:17834523 259 6e-70
  Ricinus communis blastx  30174.m008647|PACid:16822293 254 2e-68
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
detail
Sequence: CAS01_045_L07.f_2_ORF1  Length: 100 aa
noIPR
unintegrated
unintegrated
PTHR11295[52-97]T 8e-11 PTHR11295 CDC2, MAP KINASE-RELATEDCDC2, MAP KINASE-RELATED
PTHR11295:SF69[52-97]T 8e-11 PTHR11295:SF69 MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATEDMITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATED
seg[28-38]? NA seg segseg
Sequence: CAS01_045_L07.f_2_ORF2  Length: 94 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[7-94]T 3e-42 PD000001 Q8GZR5_MALMI_Q8GZR5;Q8GZR5_MALMI_Q8GZR5;
PS50011[1-94]T 11.143 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[8-94]T 5.5e-14 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[8-94]T 2.1e-15 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:3.30.200.20[8-94]T 1e-22 G3DSA:3.30.200.20 no descriptionno description
PTHR11295[7-94]T 2.6e-57 PTHR11295 CDC2, MAP KINASE-RELATEDCDC2, MAP KINASE-RELATED
PTHR11295:SF69[7-94]T 2.6e-57 PTHR11295:SF69 MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATEDMITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATED
Sequence: CAS01_045_L07.f_3_ORF2  Length: 103 aa
No hits reported.
Sequence: CAS01_045_L07.f_4_ORF2  Length: 67 aa
No hits reported.
Sequence: CAS01_045_L07.f_5_ORF1  Length: 151 aa
No hits reported.