Summary
| Sequence ID | CAS01_044_D17.f (DB935721) | |
| Sequence Length | 614 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | Mapped | |
| Gbrowse Ptr | Mapped | |
| Gbrowse Vvi | Mapped | |
| Gbrowse Ath | Mapped | |
| Transcript scaffold composed of the full-length cDNA(s) | Scaffold06980 | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_005477 (Scaffold06980) |
| >CAS01_044_D17.f GATTCACTTTTCTCTTCGTGCACTGCACAACTCCATTCTCAATCAAATCTCCATTCCCTCAATGCCAATCCTCTCTGAAA CCTACGCCTGTGTTCCCACCACCGAGCGCGGCCGTGGGATCTTAATCTCCGGCAATCCCAAATCCAATTCCATCCTCTTC ACCAACAACCGATCAGTTCTCATCCTCAACCTCGATAACCCTCTCGATGTCTCCGTCTACGGTGACCATGGTTATCAAGC TACCGTCGCTCGTTACTCCCCCAACGGCGAGTGGATCGCCTCTGCTGACGTCTCCGGTACTGTCAGGATCTGGGGGGCTT ATAATGATCATGTCTTGAAGAAGGAATTTAAGGTTTTGTCTGGTCGGATCGATGATCTTCAGTGGTCGCCTGATGGGTTG AGGATCGTTGCTTGTGGAGATGGCAAGGGCAAATCGCTAGTGCGTGCTTTTATGTGGGATTCAGGCACTAATGTAGGGGA ATTTGATGGGCACTCGAGGCGAGTTCTTAGCTGTGCATTTAAGCCAACAAGACCATTTCGGATAGTGACTTGTGGGGAGG ATTTTTTGGTGAATTTCTATGAAGGACCTCCATTTAAATTCAAGCTATCCCGCA |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ref|XP_002533127.1| WD-repeat protein, putative [Ricinus communis] gb|EEF29254.1| WD-repeat protein, putative [Ricinus communis] | 373 | 1e-102 |
| Manihot esculenta | blastn | cassava4.1_003872m|PACid:17968086 | 1080 | 0.0 |
| FGENESH CDS | blastn | scaffold06631_FGENESH32 10 exon (s) 299369 - 311477 2295 bp, chain - | 1003 | 0.0 |
| Arabidopsis thaliana | blastx | AT3G18060.1 | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:6183880-6186788 FORWARD LENGTH=609 | 332 | 9e-92 |
| Populus trichocarpa | blastx | POPTR_0015s04290.1|PACid:18232754 | 356 | 7e-99 |
| Vitis vinifera | blastx | GSVIVT01008399001|PACid:17821006 | 332 | 6e-92 |
| Ricinus communis | blastx | 29924.m000096|PACid:16813696 | 373 | 1e-104 |
| InterProScan |
| No hits found |
| Sequence: CAS01_044_D17.f_2_ORF1 Length: 204 aa | ||||||||||||||||
| InterPro IPR001680 Repeat |
| |||||||||||||||
| InterPro IPR011046 Domain |
| |||||||||||||||
| InterPro IPR015943 Domain |
| |||||||||||||||
| noIPR unintegrated |
| |||||||||||||||
![[67-105]T 0.00061 PF00400 WD40](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[66-105]T 0.0061 SM00320 no description](http://pmix.psc.riken.jp/img/interpro/R.gif){kind=small}
![[73-114]T 9.172 PS50082 WD_REPEATS_2](http://pmix.psc.riken.jp/img/interpro/M.gif){kind=small}
![[54-194]T 2.6e-21 SSF50978 WD40 repeat-like](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
![[19-203]T 6.2e-34 G3DSA:2.130.10.10 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[24-203]T 5.3e-97 PTHR19856 WD-REPEATCONTAINING PROTEIN (WDR1)](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
| Sequence: CAS01_044_D17.f_3_ORF2 Length: 70 aa | |||||||
| noIPR unintegrated |
| ||||||
![[1-32]? NA seg seg](http://pmix.psc.riken.jp/img/interpro/G.gif){kind=small}
| Sequence: CAS01_044_D17.f_4_ORF2 Length: 65 aa | |
| No hits reported. | |
| Sequence: CAS01_044_D17.f_5_ORF2 Length: 87 aa | |
| No hits reported. | |
