Sequence ID | CAS01_028_K03.r (DB947639) | |
Sequence Length | 505 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold10819 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_008451 (Scaffold10819) |
>CAS01_028_K03.r TTTTGATCCCAATAAACGCATTACAGTTGATGAGGCACTTTGTCACCCATACTTGTCGTCTCTTCATGATATTAATGATG AGCCAGTCTGTCCCAGGCCTTTTCATTTTGATTTTGAGCACCCATCATGTACTGAAGAGCACATCAAGGAGCTCATCTGG CGGGAATCAGTGAAGTTCAATCCAGATCCTCCAGCACATTGGGAGAAAATGAATACTTAGAAATAGGTAATTGGGATAAT TTCATTCCCTTGATACATTATTGTCCACCGACATTTCCTGAGAGTTCATGGACTTTGCATTCCTAGAATCTGAAATATAA AGTCACCCAATGTTCCAGGCACTGATGTATAACTTCTTTCAAGGGATTTGGGTGCTTATGTTTTATGTTAATGCATGAAG TGCATTGTAAAAAAAACTAAAAAATTAATGCGAATCTTCTGTAAGTACTAGTAGTTGGGTGTTTAAGGGATAGGAGTAAA TCAAAGATCGACATCTTGTGCTGCT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002509851.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF51238.1| big map kinase/bmk, putative [Ricinus communis] | 146 | 1e-33 |
Manihot esculenta | blastn | cassava4.1_009399m|PACid:17971019 | 436 | 1e-122 |
FGENESH CDS | blastn | scaffold05280_FGENESH70 6 exon (s) 565863 - 569281 1170 bp, chain - | 436 | 1e-122 |
Arabidopsis thaliana | blastx | AT1G01560.2 | Symbols: ATMPK11, MPK11 | MAP kinase 11 | chr1:202345-204189 FORWARD LENGTH=369 | 114 | 4e-26 |
Populus trichocarpa | blastx | POPTR_0003s13170.1|PACid:18218342 | 138 | 2e-33 |
Vitis vinifera | blastx | GSVIVT01019406001|PACid:17829033 | 124 | 3e-29 |
Ricinus communis | blastx | 30190.m011265|PACid:16823622 | 146 | 4e-36 |
InterProScan |
No hits found |
Sequence: CAS01_028_K03.r_1_ORF2 Length: 56 aa | |
No hits reported. |
Sequence: CAS01_028_K03.r_2_ORF1 Length: 72 aa | |||||||
InterPro IPR011009 Domain |
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noIPR unintegrated |
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Sequence: CAS01_028_K03.r_3_ORF1 Length: 56 aa | |
No hits reported. |