Home > Keyword search > CAS01_028_K03.r

Summary
Sequence ID CAS01_028_K03.r (DB947639)
Sequence Length 505 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold10819
Related probe ID of RIKEN ver.1 microarray  R_Mes01_008451 (Scaffold10819)
 
 
Sequence
>CAS01_028_K03.r
TTTTGATCCCAATAAACGCATTACAGTTGATGAGGCACTTTGTCACCCATACTTGTCGTCTCTTCATGATATTAATGATG
AGCCAGTCTGTCCCAGGCCTTTTCATTTTGATTTTGAGCACCCATCATGTACTGAAGAGCACATCAAGGAGCTCATCTGG
CGGGAATCAGTGAAGTTCAATCCAGATCCTCCAGCACATTGGGAGAAAATGAATACTTAGAAATAGGTAATTGGGATAAT
TTCATTCCCTTGATACATTATTGTCCACCGACATTTCCTGAGAGTTCATGGACTTTGCATTCCTAGAATCTGAAATATAA
AGTCACCCAATGTTCCAGGCACTGATGTATAACTTCTTTCAAGGGATTTGGGTGCTTATGTTTTATGTTAATGCATGAAG
TGCATTGTAAAAAAAACTAAAAAATTAATGCGAATCTTCTGTAAGTACTAGTAGTTGGGTGTTTAAGGGATAGGAGTAAA
TCAAAGATCGACATCTTGTGCTGCT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002509851.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF51238.1| big map kinase/bmk, putative [Ricinus communis] 146 1e-33
  Manihot esculenta blastn  cassava4.1_009399m|PACid:17971019 436 1e-122
  FGENESH CDS blastn  scaffold05280_FGENESH70 6 exon (s) 565863 - 569281 1170 bp, chain - 436 1e-122
  Arabidopsis thaliana blastx  AT1G01560.2 | Symbols: ATMPK11, MPK11 | MAP kinase 11 | chr1:202345-204189 FORWARD LENGTH=369 114 4e-26
  Populus trichocarpa blastx  POPTR_0003s13170.1|PACid:18218342 138 2e-33
  Vitis vinifera blastx  GSVIVT01019406001|PACid:17829033 124 3e-29
  Ricinus communis blastx  30190.m011265|PACid:16823622 146 4e-36
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_028_K03.r_1_ORF2  Length: 56 aa
No hits reported.
Sequence: CAS01_028_K03.r_2_ORF1  Length: 72 aa
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-49]T 1.1e-05 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
PD054205[22-59]T 6e-15 PD054205 Q84XZ6_PETCR_Q84XZ6;Q84XZ6_PETCR_Q84XZ6;
Sequence: CAS01_028_K03.r_3_ORF1  Length: 56 aa
No hits reported.