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Summary
Sequence ID CAS01_016_N11.r (DB943948)
Sequence Length 527 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06979
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005476 (Scaffold06979)
 
 
Sequence
>CAS01_016_N11.r
CTGGCTGGCTTCTGGGGACAGCCATGTTTTAGGAAGCTTTTTGCAATAATAAGAAGAGCTTCACTCATCGTTTTCATCCT
TCGAGTTGTCATTTTTGCCAGTGCTCTTATCATGGGAGTCATTGGAATTGAGAGTAGTATAGAAATGATAAAGAATCATG
AGTTCATGGGATTCTTAGGTTTCTGCAGCAGTCAATGATCGTTGGCAAATGTTGCCTCCTCTTTCATCAAGGAAATTTGA
TGAAGCTAGAATAGAAAGCAATTGGATAATATGGTTGGCCAGCACCTAGTTGTCCAACCCACTTCAAAATTGTGATTGGA
ATAATGGAGGATGTGAGATTTGCAGAGTGTTTGTGTAATGTATTTTTGAGTGTTAGCTGCTGGCTGACACCATCAATTCT
AGATTTCATTTGTGCTTGTGCCTGTTAGTCTGTGTTAGCTCCTGGCTGACACCATTTCAATAAAAAAGAATGTTTCATGT
ACAACTCGATTAATATTTATTTAATAAATAATAGTCTTTATTGATTC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|NP_850267.1| Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana] gb|AAL77676.1| At2g36630/F1O11.26 [Arabidopsis thaliana] gb|AAM91463.1| At2g36630/F1O11.26 [Arabidopsis thaliana] gb|AEC09275.1| Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana] 101 5e-20
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx  AT2G36630.1 | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:15352767-15355050 REVERSE LENGTH=459 101 3e-22
  Populus trichocarpa blastx  POPTR_0006s11920.1|PACid:18213888 91.3 4e-19
  Vitis vinifera blastx  GSVIVT01033741001|PACid:17839399 92.4 1e-19
  Ricinus communis blastx  29815.m000496|PACid:16809552 97.1 4e-21
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_016_N11.r_1_ORF1  Length: 65 aa
noIPR
unintegrated
unintegrated
PTHR14255[1-65]T 4.4e-12 PTHR14255 ATP-DEPENDENT PROTEASE (CEREBLON)ATP-DEPENDENT PROTEASE (CEREBLON)
Sequence: CAS01_016_N11.r_3_ORF2  Length: 52 aa
No hits reported.
Sequence: CAS01_016_N11.r_5_ORF2  Length: 65 aa
No hits reported.