Sequence ID | CAS01_014_D19.f (DB924819) | |
Sequence Length | 606 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | Mapped | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold09914 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_007554 (Scaffold09914) |
>CAS01_014_D19.f GAGATATTTTTCAACTAAAGGTCTCCATGGAAATGCCCGCTCGAAGATCCAATTACACGCTTCTTAGTCAGTACCCCGAT GAGCAGCTGCTCGCGGCGCCACCACCACCACCATACTACGACCCGTCTAATTCCAGTGAATCCAAGAGCAGCAAAGTAAA GCCAGATAGAGGCTTCGATTGGGATTCTAGCGGTGATCACAGAGTAAATCAGCAAGCAAATAGTAATCGGATTGGTAATC TGAATATGTACTCGTCGATCGGGTTGCAAAGACAATCAAGCGGGAGTAGTTTCGGTGAGAGTTCGTTGTCTGGAGAGTGT TATGCCCCGACGCAGTCAACGACTGGGGGGAATGAGATTGAGACTTATGGATATATGCACGAGGATGGGAATTTGATGAG AGTGAGAGCGGTGGATGCTGCGGTGATTACAGGGATGGGTACTGGATCATCTGGGAAGAGCTGGGCGCAGCAGACGGAGG AGAGTTACCAATTGCAGTTGGCGTTGGCCTTGAGGTTGTCCTCAGAGGCGACTTGTGCCGATGATCCCAATTTTTTGGAT CCCGATGCTGATGAATCCGCGTTGCTGTCGACTAGCTCCAACTCGC |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002528586.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF33794.1| map3k delta-1 protein kinase, putative [Ricinus communis] | 257 | 7e-67 |
Manihot esculenta | blastn | cassava4.1_002336m|PACid:17971748 | 1104 | 0.0 |
FGENESH CDS | blastn | scaffold03436_FGENESH13 2 exon (s) 171446 - 172539 801 bp, chain - | 1104 | 0.0 |
Arabidopsis thaliana | blastx | AT5G03730.1 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821 | 204 | 5e-53 |
Populus trichocarpa | blastx | POPTR_0006s11710.1|PACid:18211326 | 210 | 7e-55 |
Vitis vinifera | blastx | GSVIVT01033779001|PACid:17839429 | 95.1 | 2e-20 |
Ricinus communis | blastx | 29092.m000453|PACid:16802274 | 257 | 2e-69 |
InterProScan |
No hits found |
Sequence: CAS01_014_D19.f_1_ORF2 Length: 50 aa | |
No hits reported. |
Sequence: CAS01_014_D19.f_2_ORF2 Length: 60 aa | |
No hits reported. |
Sequence: CAS01_014_D19.f_3_ORF1 Length: 201 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_014_D19.f_4_ORF2 Length: 54 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_014_D19.f_4_ORF3 Length: 79 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_014_D19.f_6_ORF2 Length: 86 aa | |||||||
noIPR unintegrated |
|