Home > Keyword search > CAS01_014_D19.f

Summary
Sequence ID CAS01_014_D19.f (DB924819)
Sequence Length 606 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold09914
Related probe ID of RIKEN ver.1 microarray  R_Mes01_007554 (Scaffold09914)
 
 
Sequence
>CAS01_014_D19.f
GAGATATTTTTCAACTAAAGGTCTCCATGGAAATGCCCGCTCGAAGATCCAATTACACGCTTCTTAGTCAGTACCCCGAT
GAGCAGCTGCTCGCGGCGCCACCACCACCACCATACTACGACCCGTCTAATTCCAGTGAATCCAAGAGCAGCAAAGTAAA
GCCAGATAGAGGCTTCGATTGGGATTCTAGCGGTGATCACAGAGTAAATCAGCAAGCAAATAGTAATCGGATTGGTAATC
TGAATATGTACTCGTCGATCGGGTTGCAAAGACAATCAAGCGGGAGTAGTTTCGGTGAGAGTTCGTTGTCTGGAGAGTGT
TATGCCCCGACGCAGTCAACGACTGGGGGGAATGAGATTGAGACTTATGGATATATGCACGAGGATGGGAATTTGATGAG
AGTGAGAGCGGTGGATGCTGCGGTGATTACAGGGATGGGTACTGGATCATCTGGGAAGAGCTGGGCGCAGCAGACGGAGG
AGAGTTACCAATTGCAGTTGGCGTTGGCCTTGAGGTTGTCCTCAGAGGCGACTTGTGCCGATGATCCCAATTTTTTGGAT
CCCGATGCTGATGAATCCGCGTTGCTGTCGACTAGCTCCAACTCGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002528586.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF33794.1| map3k delta-1 protein kinase, putative [Ricinus communis] 257 7e-67
  Manihot esculenta blastn  cassava4.1_002336m|PACid:17971748 1104 0.0
  FGENESH CDS blastn  scaffold03436_FGENESH13 2 exon (s) 171446 - 172539 801 bp, chain - 1104 0.0
  Arabidopsis thaliana blastx  AT5G03730.1 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821 204 5e-53
  Populus trichocarpa blastx  POPTR_0006s11710.1|PACid:18211326 210 7e-55
  Vitis vinifera blastx  GSVIVT01033779001|PACid:17839429 95.1 2e-20
  Ricinus communis blastx  29092.m000453|PACid:16802274 257 2e-69
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_014_D19.f_1_ORF2  Length: 50 aa
No hits reported.
Sequence: CAS01_014_D19.f_2_ORF2  Length: 60 aa
No hits reported.
Sequence: CAS01_014_D19.f_3_ORF1  Length: 201 aa
noIPR
unintegrated
unintegrated
seg[25-53]? NA seg seg[92-104]? NA seg seg[163-174]? NA seg segseg
Sequence: CAS01_014_D19.f_4_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[21-32]? NA seg seg[37-46]? NA seg segseg
Sequence: CAS01_014_D19.f_4_ORF3  Length: 79 aa
noIPR
unintegrated
unintegrated
seg[1-15]? NA seg seg[55-75]? NA seg segseg
Sequence: CAS01_014_D19.f_6_ORF2  Length: 86 aa
noIPR
unintegrated
unintegrated
seg[50-61]? NA seg segseg