Home > Microarray > Keyword search > R_Mes01_007558

Summary
Probe sequence ID R_Mes01_007558
Target sequence ID Scaffold09918
Sequence composing scaffold 
Probe sequence length 60 nucleotides
Probe sequence
>R_Mes01_007558|Scaffold09918
GATTCCAGTTACTGAACAGAAATTATATTATCAGGGGATACAGCTAGAGCGGGAGAAGAA
 
 
BLAST results
Query ID: CAS01_014_E15.f
vs DB Program Description Score E value
  NCBI nr blastx  ref|NP_192994.1| E3 ubiquitin-protein ligase UPL5 [Arabidopsis thaliana] sp|Q9SU29.1|UPL5_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL5; Short=Ubiquitin-protein ligase 5 emb|CAB41727.2| polyubiquitin-like protein [Arabidopsis thaliana] emb|CAB78300.1| polyubiquitin-like protein [Arabidopsis thaliana] dbj|BAF01094.1| polyubiquitin-like protein [Arabidopsis thaliana] gb|AEE83149.1| E3 ubiquitin-protein ligase UPL5 [Arabidopsis thaliana] 67.4 1e-09
  Manihot esculenta blastn  cassava4.1_030955m|PACid:17964842 593 1e-169
  FGENESH CDS blastn  scaffold09151_FGENESH14 3 exon (s) 120175 - 124666 2550 bp, chain + 801 0.0
  Arabidopsis thaliana blastx  AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873 67.4 7e-12
  Populus trichocarpa blastx  POPTR_0016s01430.1|PACid:18251168 64.3 7e-11
  Vitis vinifera blastx  GSVIVT01003328001|PACid:17818430 61.6 3e-10
  Ricinus communis blastx  29206.m000140|PACid:16802454 56.6 9e-09

Query ID: CAS01_014_E15.r
vs DB Program Description Score E value
  NCBI nr blastx  emb|CBI23919.3| unnamed protein product [Vitis vinifera] 61.6 4e-08
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx  AT4G08480.1 | Symbols: MAPKKK9, MEKK2 | mitogen-activated protein kinase kinase kinase 9 | chr4:5388253-5391507 REVERSE LENGTH=773 49.7 5e-07
  Populus trichocarpa blastx  POPTR_0002s08950.1|PACid:18245706 53.1 5e-08
  Vitis vinifera blastx  GSVIVT01023079001|PACid:17831673 61.6 8e-11
  Ricinus communis blastx  29908.m006213|PACid:16813029 58.2 9e-10