Home > Microarray > Keyword search > R_Mes01_006345

Summary
Probe sequence ID R_Mes01_006345
Target sequence ID Scaffold08249
Sequence composing scaffold 
Probe sequence length 60 nucleotides
Probe sequence
>R_Mes01_006345|Scaffold08249
TGAATGCTATTCCTGCAATTGAGAACAACCATCCAGTGTCTCTAGAAAACACAGTGATTC
 
 
BLAST results
Query ID: Contig08831
vs DB Program Description Score E value
  NCBI nr blastx  gb|ADF59041.1| putative NAC transcription factor [Jatropha curcas] 285 1e-74
  Manihot esculenta blastn  cassava4.1_017977m|PACid:17974422 969 0.0
  FGENESH CDS blastn  scaffold08100_FGENESH1 6 exon (s) 4243 - 8556 561 bp, chain + 666 0.0
  Arabidopsis thaliana blastx  AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription factor 3 | chr1:6152572-6153425 REVERSE LENGTH=165 254 6e-68
  Populus trichocarpa blastx  POPTR_0012s03490.1|PACid:18229419 271 7e-73
  Vitis vinifera blastx  GSVIVT01029373001|PACid:17836218 269 1e-72
  Ricinus communis blastx  29785.m000968|PACid:16808514 275 2e-74

Query ID: CAS01_030_O21.r
vs DB Program Description Score E value
  NCBI nr blastx  gb|ADF59041.1| putative NAC transcription factor [Jatropha curcas] 200 1e-49
  Manihot esculenta blastn  cassava4.1_017977m|PACid:17974422 634 0.0
  FGENESH CDS blastn  scaffold08100_FGENESH1 6 exon (s) 4243 - 8556 561 bp, chain + 426 1e-119
  Arabidopsis thaliana blastx  AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription factor 3 | chr1:6152572-6153425 REVERSE LENGTH=165 179 1e-45
  Populus trichocarpa blastx  POPTR_0012s03490.1|PACid:18229419 194 5e-50
  Vitis vinifera blastx  GSVIVT01029373001|PACid:17836218 186 8e-48
  Ricinus communis blastx  29662.m000456|PACid:16805099 192 1e-49