Home > Microarray > Keyword search > R_Mes01_005481

Summary
Probe sequence ID R_Mes01_005481
Target sequence ID Scaffold06989
Sequence composing scaffold 
Probe sequence length 60 nucleotides
Probe sequence
>R_Mes01_005481|Scaffold06989
TGTGAAGAGTTTCTCCTTTAGTAAACGAGAAGGTGGAGATTTTTCTACAGCATGTTTCTC
 
 
BLAST results
Query ID: CAS01_044_E03.f
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002511981.1| WD-repeat protein, putative [Ricinus communis] gb|EEF50650.1| WD-repeat protein, putative [Ricinus communis] 254 8e-66
  Manihot esculenta blastn  cassava4.1_005782m|PACid:17960266 763 0.0
  FGENESH CDS blastn  scaffold07762_FGENESH44 23 exon (s) 401239 - 412448 2013 bp, chain + 418 1e-116
  Arabidopsis thaliana blastx  AT1G73720.1 | Symbols: SMU1 | transducin family protein / WD-40 repeat family protein | chr1:27725059-27729722 FORWARD LENGTH=511 234 4e-62
  Populus trichocarpa blastx  POPTR_0011s16030.1|PACid:18232292 249 9e-67
  Vitis vinifera blastx  GSVIVT01007685001|PACid:17820443 249 1e-66
  Ricinus communis blastx  30174.m008725|PACid:16822370 254 3e-68

Query ID: Contig05824
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002317691.1| predicted protein [Populus trichocarpa] >gi|... 197 6e-49 >ref|XP_002317691.1| predicted protein [Populus trichocarpa] gb|EEE98303.1| predicted protein [Populus trichocarpa] 197 6e-49
  Manihot esculenta blastn  cassava4.1_008129m|PACid:17960267 527 1e-149
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx  AT1G73720.1 | Symbols: SMU1 | transducin family protein / WD-40 repeat family protein | chr1:27725059-27729722 FORWARD LENGTH=511 176 6e-45
  Populus trichocarpa blastx  POPTR_0011s16030.1|PACid:18232292 197 4e-51
  Vitis vinifera blastx  GSVIVT01007685001|PACid:17820443 189 5e-49
  Ricinus communis blastx  30174.m008725|PACid:16822370 92.0 1e-19