Home > Polymorphism > R_MesP_011965m.04

Polymorphism
TypeScaffold IDPolymorphism position on scaffold11170Related gene model IDGene model directionGene model description
SNPscaffold11170109299cassava4.1_011965m+PFAM:PF00069,PF07714
Panther:PTHR22986
KOG:KOG0581
KEGG ec:
KEGG Orthology:
best arabidopsis TAIR10 hit name: AT1G73500.1
best arabidopsis TAIR10 hit symbol:ATMKK9,MKK9
best arabidopsis TAIR10 hit defline:MAP kinase kinase 9
Synonymous / Nonsynonymous substitution
SNP in UTR
Cyan: synonymous substitution   Red: nonsynonymous substitution
Triangle: transversion substitution   Dot: transition substitution   Diamond: insertion/deletion

Allele  C/G  ( Transversion substitution )
AM560-2 (Predicted CDS from genome sequence)  C
CAS36.01  -
CAS36.04  -
CM21772  -
CM523-7  -
MCol22  -
IAC 12.829  -
KU50  G
MBra685  -
MCol1522  -
MNga2  -
MPer183  -
Mirassol  -
SG107-35  -
Sauti, Gomani, Mbundumali, TME 1 and Mkondezi  G
TMS30572 and CM2177-2  -
Unknown  C
 ' ∗ ' : gap (insertion/deletion)     ' − ' : No data 


Primer
Left Primer sequence 
GGCGGAATTCGGATGTTTT
Left Primer start position  109258
Left Primer sequence length  19
Left Primer TM (DegC)  62.078
Left Primer %GC  47.368
Right Primer sequence 
GTGCACAACACATGCATGAAAC
Right Primer start position  109423
Right Primer sequence length  22
Right Primer TM (DegC)  62.397
Right Primer %GC  45.455
Amplicon 
GGCGGAATTCGGATGTTTTTTTCCTTTCTTTTGTATATTCCCTTATAATCCTTATCTCTCACAGCGGTGAATCTCTGCTGATAAAGAAGAGAGAATCAAA
ATTTGTTTTTAATGTGATTCTGAAAAAGCATGGTTGTGTATAACGTTTCATGCATGTGTTGTGCAC
Amplicon length  166