Type | Scaffold ID | Polymorphism position on scaffold00506 | Related gene model ID | Gene model direction | Gene model description |
---|---|---|---|---|---|
SNP | scaffold00506 | 136513 | cassava4.1_010219m | - | PFAM:PF00069 Panther:PTHR11295 KOG:KOG0660 KEGG ec:2.7.11.24 KEGG Orthology:K04371 best arabidopsis TAIR10 hit name: AT3G45640.1 best arabidopsis TAIR10 hit symbol:ATMAPK3,ATMPK3,MPK3 best arabidopsis TAIR10 hit defline:mitogen-activated protein kinase 3 |
Synonymous / Nonsynonymous substitution |
---|
SNP in UTR |
Allele | C/T ( Transition substitution ) | |
AM560-2 (Predicted CDS from genome sequence) | C | |
CAS36.01 | - | |
CAS36.04 | - | |
CM21772 | - | |
CM523-7 | - | |
MCol22 | - | |
IAC 12.829 | - | |
KU50 | - | |
MBra685 | - | |
MCol1522 | - | |
MNga2 | - | |
MPer183 | - | |
Mirassol | - | |
SG107-35 | - | |
Sauti, Gomani, Mbundumali, TME 1 and Mkondezi | - | |
TMS30572 and CM2177-2 | - | |
Unknown | T |
Polymorphism position Unknown Unknown Unknown Unknown MBra685 MBra685 AM560-2 Contig |
DV443865 DV445163 DV454258 FG805783 CK901347 CK901369 cassava4.1_010219m | .........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210......1220......1230......1240......1250......1260......1270......1280......1290......1300......1310......1320......1330......1340......1350......1360......1370......1380......1390......1400......1410......1420......1430......1440......1450......1460......1470......1480......1490......1500......1510......1520......1530......1540......1550......1560..... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................P.P................P................................................................................................................................................................................................................................................................................................................................................................................................................ _________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________TAACATTTGATCCCACCAGAAGAATTTCTGTTGAAGAAGCATTAGCGCATCCGTACCTGGCAAGGTTACATGATGTAGCTGATGAACCAGTGTGCCCAGTTCCATTCACTTTTGATTTTGAGCAACAGCCCTTGGGAGAAGAACAGATGAAGGAAATGATTTACAGAGAGGCTTTAGCACTCAATCCTGAGTATGCATAATGGAGAAAGTAGATATGTTACTTGGTATAATATTCATTTATTGTTCAAATGTTGTTTGATAGAAAAGAGCTGTGGATGAAACAATGCAACCCTAAGAGAGAAATCATGTTGAACAACAAGGCGGGTTACCGATCAAACAAGTCAAATCCCTCTGTTTGATTGTCTTCTGTCCT*TGTCACG*GGCGTGCTGATTTTGCACCCATCACTACCCATCAGCTGTACACTACCTT*ACAAT*********GTTAGTAACCTTACAGCCTTCATATGACTAAGAATTTCTTTTATTTTTCTCACTTCCTCTTGTAAGATTTGCTGATTTGTGATTTTTTTTTTTTTT*GAAATTTGAACTATTCTCAATGTAGTTAATGCTTATTGTGTGCAATAGATTGAATACAAATGTAAAAAAAAAAAAAAAAAATCG____________ ____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ACATCCGGCAACTAAGTCAATATCCTCGTCAGCCTTTAGCCCAAGTTTTTCCTCATGTTAATCCTTTGGCCATTGATCTTATTGATAGAATGTTAACATTTGATCCCACCAGAAGAATTTCTGTTGAAGAAGCATTAGCGCATCCGTACCTGGCAAGGTTACATGATGTAGCTGATGAACCAGTGTGCCCAGTTCCATTCACTTTTGATTTTGAGCAACAGCCCTTGGGAGAAGAACAGATGAAGGAAATGATTTACAGAGAGGCTTTAGCACTCAATCCTGAGTATGCATAATGGAGAAAGTAGATATGTTACTTGGTATAATATTCATTTATTGTTCAAATGTTGTTTGATAGAAAAGAGCTGTGGATGAAACAATGCAACCCTAAGAGAGAAATCATTTTGAACAACAAGGCGGGTCACTGATCAAACAAGTCACATCCCT****TTGATTGTCTTCTGTCCT*TGTCACG*GGCGTGCTGATTTTGCACCCATCAGTACCCATCAGCTGTACACTACCTT*ACAATCTTTATGAGGTTAGTCACCTTACAGCCTTCATATGACTAAGAATTTCTTTTATTTTTCTCACTTCCTCTTGTAAGATTTGCTGATTTGTGATTTTTTTTTTT****GAAATTTGAACTATTCTCAATGTAGTTAATGCTTATTGTGTGCAATAGATTGAATACAAATGTAAACTGTTGCTTGAAAAAAAAAAAAAAAAAATC _______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________GCATCCGTACCTGGCAAGGTTACATGATGTAGCTGATGAACCAGTGTGCCCAGTTCCATTCACTTTTGATTTTGAGCAACAGCCCTTGGGAGAAGAACAGATGAAGGAAATGATTTACAGAGAGGCTTTAGCACTCAATCCTGAGTATGCATAATGGAGAAAGTAGATATGTTACTTGGTATAATATTCATTTATTGTTCAAATGTTGTTTGATAGAAAAGAGCTGTGGATGAAACAATGCAACCCTAAGAGAGAAATCATGTTGAACAACAAGGCGGGTTACCGATCAAACAAGTCAAATCCCTCTGTTTGATTGTCTTCTGTCCT*TGTCACG*GGCGTGCTGATTTTGCACCCATCACTACCCATCAGCTGTACACTACCTT*ACAAT*********GTTAGTAACCTTACAGCCTTCATATGACTAAGAATTTCTTTTATTTTTCTCACTTCCTCTTGTAAGATTTGCTGATTTGTGATTTTTTTTTTTTTTTGAAATTTGAACTATTCTCAATGTAGNTAATGCTTATTGTGTGCAATAGATTGAATACAAATGTAAACTGTTGCTT_____________________ _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________TCATGTAGACACAGCGGGTTACTGATCAAACAAGTCAATCCCTCTGTTTGATAGTCTTCTGTCCTATGTCACGNGGCGTGCTGATTTTGCACCCATCACTACCCATCAGCTGTACACTAGCTTGACAATCTTTATGAGGTTAGTCACCTTACAGCCTTCATATGACTAAGAATTTCTTTTATTTTTCTCACTTCCTCTTGTAAGATTTGCTGATTTGTGATTTTTTTTTT*****GAAATTTGAATTATTCCCAATGTAGTTAATGCTTATTGTGTGCAATAGATTGAATACAAATGTAAACTGTTGCGC_____________________ ________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ACTGATGTCTACATTGCCACGGAGCTCATGGACACTGATCTTCATCAGATTATACGCTCCAACCAAGGTTTATCAGAGGAGCATTGTCAGTACTTCCTGTATCAGATTCTCCGAGGACTGAAATACATACACTCGGCTAATATTATTCATAGGGATCTAAAACCCAGTAATTTGCTG_______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ACTGATGTCTACATTGCCACGGAGCTCATGGATACTGATCTTCATCAGATTATACGCTCCAACCAAGGTTTATCAGAGGAGCATTGTCAGTACTTCCTGTATCAGATTCTCCGAGGACTGAAATACATACACTCGGCTAATATTATTCATAGGGATCTAAAACCCAGTAATTTGCTG_______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ AAAGAGAGAGATATATATTTAGGTGGAGGAAATGGCTAACGGTGAATTTCCGGCGGTTCCAACTCACGGCGGCCAATTTATCCAATACGACATTTTCGGAAATCTTTTCGAGATCACCTCGAAGTATCAGCCTCCTATCATGCCGATTGGCCGCGGCGCTTATGGTATTGTCTGCTCGGTGTTGAATTCGGAGACGAATGAGATGGTTGCAATAAAGAAGATAGCTAATGCTTTTGACAATCACATGGATGCCAAACGAACGCTTCGGGAGATTAAGTTGCTTCGCCATTTTGATCACGAGAACGTTGTAGCTATCAGAGATGTGATTCCTCCACCTTTGCGAAGAGAATTCACTGATGTCTACATTGCCACGGAGCTCATGGATACTGATCTTCATCAGATTATACGCTCCAACCAAGGTTTATCAGAGGAGCATTGTCAGTACTTCCTGTATCAGATTCTCCGAGGACTGAAATACATACACTCGGCTAATATTATTCATAGGGATCTAAAACCCAGTAATTTGCTGTTAAATGCAAATTGCGACTTAAAGATATGTGATTTTGGTTTAGCTCGGCCAACGGCAGAGAATGAGTTTATGACAGAATACGTTGTTACCAGATGGTATAGAGCACCGGAGCTTTTGCTTAACTCTACGGACTACACTGATGCAATAGATGTGTGGTCTGTGGGTTGCATCTTTATGGAACTTATGAACAGAAGGCCTTTATTTCCAGGCAACGATCACGTGCATCAGTTGCGCCTATTGACGGAGCTCCTTGGCACTCCAACTGAAGCAGATCTTGGGTTTGTCAGGAGTGAAGATGCTAGAAGATACATCCGGCAACTAAGTCAATATCCTCGTCAGCCTTTAGCCCAAGTTTTTCCTCGTGTCAATCCTTTGGCCATTGATCTTATTGATAGAATGTTAACATTTGATCCCACCAGAAGAATTTCTGTTGAAGAAGCATTAGCGCATCCGTACCTGGCAAGGTTACATGATGTAGCTGATGAACCAGTGTGCCCAGTTCCATTCACTTTTGATTTTGAGCAACAGCCCTTGGGAGAAGAACAGATGAAGGAAATGATTTACAGAGAGGCTTTAGCACTCAATCCTGAGTATGCATAATGGAGAAAGTAGATATGTTGCCTGGTATAATATTCATTCATTGTTCAAATGTTGTTTGATAGAAAAGAGCTGTGGATGAAACAATGCAACCCTAAGAGAGAAATCATGTTGAACA*CAAGGCGGGTTACTGATCAAACAAGTCAAATCCCTCTGTTTGATAGTCTTCTGTCCT*TGTCACG*GGCGTGCTGATTTTGCACCCATCACTACCCATCAGCTGTACACTACCTT*ACAATCTTTATGAGGTTAGTCACCTTACAGCCTTCATATGACTAAGAATTTCTTTTATTTTTCTCACTTCCTCTTGTAAGATTTGCTGATTTGTGATTTTTTTTTTT****GAAATTTGAACTATTCTCAATGTAGTTAATGCTTATTGTGTGCAATAGATTGAATACAAATGTAAACTGTTGCTTG____________________ AAAGAGAGAGATATATATTTAGGTGGAGGAAATGGCTAACGGTGAATTTCCGGCGGTTCCAACTCACGGCGGCCAATTTATCCAATACGACATTTTCGGAAATCTTTTCGAGATCACCTCGAAGTATCAGCCTCCTATCATGCCGATTGGCCGCGGCGCTTATGGTATTGTCTGCTCGGTGTTGAATTCGGAGACGAATGAGATGGTTGCAATAAAGAAGATAGCTAATGCTTTTGACAATCACATGGATGCCAAACGAACGCTTCGGGAGATTAAGTTGCTTCGCCATTTTGATCACGAGAACGTTGTAGCTATCAGAGATGTGATTCCTCCACCTTTGCGAAGAGAATTCACTGATGTCTACATTGCCACGGAGCTCATGGATACTGATCTTCATCAGATTATACGCTCCAACCAAGGTTTATCAGAGGAGCATTGTCAGTACTTCCTGTATCAGATTCTCCGAGGACTGAAATACATACACTCGGCTAATATTATTCATAGGGATCTAAAACCCAGTAATTTGCTGTTAAATGCAAATTGCGACTTAAAGATATGTGATTTTGGTTTAGCTCGGCCAACGGCAGAGAATGAGTTTATGACAGAATACGTTGTTACCAGATGGTATAGAGCACCGGAGCTTTTGCTTAACTCTACGGACTACACTGATGCAATAGATGTGTGGTCTGTGGGTTGCATCTTTATGGAACTTATGAACAGAAGGCCTTTATTTCCAGGCAACGATCACGTGCATCAGTTGCGCCTATTGACGGAGCTCCTTGGCACTCCAACTGAAGCAGATCTTGGGTTTGTCAGGAGTGAAGATGCTAGAAGATACATCCGGCAACTAAGTCAATATCCTCGTCAGCCTTTAGCCCAAGTTTTTCCTCATGTCAATCCTTTGGCCATTGATCTTATTGATAGAATGTTAACATTTGATCCCACCAGAAGAATTTCTGTTGAAGAAGCATTAGCGCATCCGTACCTGGCAAGGTTACATGATGTAGCTGATGAACCAGTGTGCCCAGTTCCATTCACTTTTGATTTTGAGCAACAGCCCTTGGGAGAAGAACAGATGAAGGAAATGATTTACAGAGAGGCTTTAGCACTCAATCCTGAGTATGCATAATGGAGAAAGTAGATATGTTACTTGGTATAATATTCATTTATTGTTCAAATGTTGTTTGATAGAAAAGAGCTGTGGATGAAACAATGCAACCCTAAGAGAGAAATCATGTTGAACAACAAGGCGGGTTACCGATCAAACAAGTCAAATCCCTCTGTTTGATTGTCTTCTGTCCT*TGTCACG*GGCGTGCTGATTTTGCACCCATCACTACCCATCAGCTGTACACTACCTT*ACAATCTTTATGAGGTTAGTCACCTTACAGCCTTCATATGACTAAGAATTTCTTTTATTTTTCTCACTTCCTCTTGTAAGATTTGCTGATTTGTGATTTTTTTTTTT****GAAATTTGAACTATTCTCAATGTAGTTAATGCTTATTGTGTGCAATAGATTGAATACAAATGTAAACTGTTGCTTGAAAAAAAAAAAAAAAAAATC |
Left Primer sequence | GCCCTTGGGAGAAGAACAGA | |
Left Primer start position | 136607 | |
Left Primer sequence length | 20 | |
Left Primer TM (DegC) | 61.670 | |
Left Primer %GC | 55.000 | |
Right Primer sequence | GGGTTGCATTGTTTCATCCA | |
Right Primer start position | 136443 | |
Right Primer sequence length | 20 | |
Right Primer TM (DegC) | 61.688 | |
Right Primer %GC | 45.000 | |
Amplicon | GCCCTTGGGAGAAGAACAGATGAAGGAAATGATTTACAGAGAGGCTTTAGCACTCAATCCTGAGTATGCATAATGGAGAAAGTAGATATGTTGCCTGGTA | |
Amplicon length | 165 |