Polymorphism
| Type | Scaffold ID | Polymorphism position on scaffold05875 | Related gene model ID | Gene model direction | Gene model description |
|---|---|---|---|---|---|
| SNP | scaffold05875 | 903931 | cassava4.1_002048m | - | PFAM:PF05922,PF00082,PF02225 Panther:PTHR10795 KOG: KEGG ec: KEGG Orthology: best arabidopsis TAIR10 hit name: AT3G14067.1 best arabidopsis TAIR10 hit symbol: best arabidopsis TAIR10 hit defline:Subtilase family protein |
| Synonymous / Nonsynonymous substitution |
|---|
| SNP in UTR |
Cyan: synonymous substitution Red: nonsynonymous substitution
Triangle: transversion substitution Dot: transition substitution Diamond: insertion/deletion
Triangle: transversion substitution Dot: transition substitution Diamond: insertion/deletion
| Allele | C/T ( Transition substitution ) | |
| AM560-2 (Predicted CDS from genome sequence) | C | |
| CAS36.01 | - | |
| CAS36.04 | - | |
| CM21772 | - | |
| CM523-7 | - | |
| MCol22 | - | |
| IAC 12.829 | - | |
| KU50 | T | |
| MBra685 | - | |
| MCol1522 | - | |
| MNga2 | - | |
| MPer183 | - | |
| Mirassol | - | |
| SG107-35 | - | |
| Sauti, Gomani, Mbundumali, TME 1 and Mkondezi | - | |
| TMS30572 and CM2177-2 | - | |
| Unknown | T |
' ∗ ' : gap (insertion/deletion) ' − ' : No data
Polymorphism position Unknown KU50 (MTAI16) KU50 (MTAI16) KU50 (MTAI16) KU50 (MTAI16) KU50 (MTAI16) KU50 (MTAI16) AM560-2 Contig |
DV454769 DB922327 DB925784 DB932621 DB940840 DB943968 DB949977 cassava4.1_002048m | .........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210......1220......1230......1240......1250......1260......1270......1280......1290......1300......1310......1320......1330......1340......1350......1360......1370......1380......1390......1400......1410......1420......1430......1440......1450......1460......1470......1480......1490......1500......1510......1520......1530......1540......1550......1560......1570......1580......1590......1600......1610......1620......1630......1640......1650......1660......1670......1680......1690......1700......1710......1720......1730......1740......1750......1760......1770......1780......1790......1800......1810......1820......1830......1840......1850......1860......1870......1880......1890......1900......1910......1920......1930......1940......1950......1960......1970......1980......1990......2000......2010......2020......2030......2040......2050......2060......2070......2080......2090......2100......2110......2120......2130......2140......2150......2160......2170......2180......2190......2200......2210......2220......2230......2240......2250......2260......2270......2280......2290......2300......2310......2320......2330......2340......2350......2360......2370......2380......2390......2400......2410......2420......2430......2440......2450......2460......2470......2480......2490......2500......2510......2520......2530.. .P...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................P........................................................................P.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................P......................................................................................P................................................... ______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________AGGTGAAGGTTTCACCAAGTAAGCTTGTGTTCNNNGCAGAAAATCAGGCATTGTCATATGATATTACATTCTCTAGTGGTAATTTGGATTGGTCTAGCATTAGCTCACAAAGTTTTGGATCAATTGAGTGGAGTGATGGAACTCATAGAGTTAGAAGTCCCATTGCTGTTAGGTGGAAGTGGAATCAAGGATCATCCAGGGCTTCCATTTGAGAATTTGGATTGTCCTCAACTTGTGTGGTTCTGTTTGCAATCTGTCAGGTTTGTTGTACAAAATTTATGGATACTGGTTTAGTTTTTAGTTTCACCAAGATTTCAAGGTGGAGCATTGATGTATTGCAGTATTCGGATGCAATAAAATTTGTTTCTTGGCCCCCCTGCAAAAAAAAAAAAAAAAAATGC _GAGGAAACTCAATGACTCTTTCCTCCGTCCCTTTCCTTCGTCTCCTCCTCTTCTTCCTTTCTCTCACCCCTCTAGTCTTCTCTTCACCATTATCAAACCTTCCACAGACCTTCATCGTCCACGTCTCCAGATCTCACAAGCCAATCTTCTTCTCCTCTCACCATGATTGGTACACATCAATCCTCCTATCCCTGCCTCCCTCCCCCCACCCCACCAAGCTTATCTATACTTATGGCCGCGCCATCAATGGCTTCTCCGCCCATCTCACTGCAGCCCAGGCAGCGGAACTCCGCCGTGTTCCTGGGATCCTCTCTGTTATCCCAGACCAGATTCGCCAGCTCCACACCACCCGCACTCCTCACTTTTTAGGCCTTTCTACGGGGTCTGGCCTTTGGCCTAATTGTGCTTACGGTGAAGACGTGATTATTGGTGTTCTGGACACCGGAATATGGCCGGAACATCCTAGTTTCTCGGACTCTGATCTGTCTCCTGTTCCTGATAATTGGAAAGGTATCTGCGAGACATCGTCCGATTTTCCTGCTTCTGCTTGTAACCGGAAACTCATCGGTGCAAGAGCCTTCTATAAAGG_________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ _GAGGAAACTCAATGGCTCTTTCCTCCGTCCCTTTCCTTCGTCTCCTCCTCTTCTTCCTTTCTCTCACCCCTCTAGTCTTCTCTTCACCATTATCAAACCTTCCACAGACCTTCATCGTCCACGTCTCCAGATCTCACAAGCCAATCTTCTTCTCCTCTCACCATGATTGGTACACATCAATCCTCCTATCCCTGCCTCCCTCCCCCCACCCCACCAAGCTTATCTATACTTATGGCCGCGCCATCAATGGCTTCTCCGCCCATCTCACTGCAGCCCAGGCAGCGGAACTCCGCCGTGTTCCTGGGATCCTCTCTGTTATCCCAGACCAGATTCGCCAGCTCCACACCACCCGCACTCCTCACTTTTTAGGCCTTTCTACGGGGTCTGGCCTTTGGCCTAATTGTGCTTACGGTGAAGACGTGATTATTGGTGTTCTGGACACCGGAATATGGCCGGAACATCCTAGTTTCTCGGACTCTGATCTGTCTCCTGTTCCTGATAATTGGAAAGGTATCTGCGAGACATCGTCCGATTTTCCTGCTTCTGCTTGTAACCGGAAACTCATCGGTGCAAGAGCCTTCTATAAAGG_________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ TGAGGAAACTCAATGGCTCTTTCCTCCGTCCCTTTCCTTCGTCTCCTCCTCTTCTTCCTTTCTCTCACCCCTCTAGTCTTCTCTTCACCATTATCAAACCTTCCACAGACCTTCATCGTCCACGTCTCCAGATCTCACAAGCCAATCTTCTTCTCCTCTCACCATGATTGGTACACATCAATCCTCCTATCCCTGCCTCCCTCCCCCCACCCCACCAAGCTTATCTATACTTATGGCCGCGCCATCAATGGCTTCTCCGCCCATCTCACTGCAGCCCAGGCAGCGGAACTCCGCCGTGTTCCTGGGATCCTCTCTGTTATCCCAGACCAGATTCGCCAGCTCCACACCACCCGCACTCCTCACTTTTTAGGCCTTTCTACGGGGTCTGGCCTTTGGCCTAATTGTGCTTACGGTGAAGACGTGATTATTGGTGTTCTGGACACCGGAATATGGCCGGAACATCCTAGTTTCTCGGACTCTGATCTGTCTCCTGTTCCTGATAATTGGAAAGGTATCTGCGAGACATCGTCCGATTTTCCTGCTTCTGCTTGTAACCGGAAACTCATCGGTGC___________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________GACATTGTCATATGATATTACATTCTCTAGTGGTAATTTGGATTGGTCTAGCATTAGCTCACAAAGTTTTGGATCAATTGAGTGGAGTGATGGAACTCATAGAGTTAGAAGTCCCATTGCTGTTAGGTGGAAGTGGAATCAAGGATCATCCAGGGCTTCCATTTGAGAATTTGGATTGTCCTCAACTTGTGTGGTTCTGTTTGCAATCTGTCAGGTTTGTTGTACAAAATTTATGGATACTGGTTTAGTTTTTAGTTTCACCAAGATTTCAAGGTGGAGCATTGATGTATTGCAGTATTCGGATGCAATAAAATTTGTTTCTTGGCCCCG_________________________ __________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________TCCAGGGGCTGCAACTGTGGATGCATGTGATCGAGAACTGGGTGGTCCAGGCAATCTCAATTACCCATCATTTTCTGTTGTTTTTGAGCCCACAACCAGTGTGGTTACACAGAAGAGGGTGGTGAAAAATGTTGGAAGTTCTGTTGATGCAATATATGAAGTCAAGGTGAATGCTCCTGCAAATATAGAGGTGAAGGTTTCACCAAGTAAGCTTGTGTTCAATGCAGAAAATCAGACATTGTCATATGATATTACATTCTCTAGTGGTAATTTGGATTGGTCTAGCATTAGCTCACAAAGTTTTGGATCAATTGAGTGGAGTGATGGAACTCATAGAGTTAGAAGTCCCATTGCTGTTAGGTGGAAGTGGAATCAAGGATCATCCAGGGCTTCCATTTGAGAATTTGGATTGTCCTCAACTTGTGTGGTTCTGTTTGCAATCTGTCAGGTTTGTTGTACAAAATTTATGGATACTGGTTTAGTTTTTAGTTTCACCAAGATTTCAAGGTGGAGCATTGATGTATTGCAGTATTCGGATGCAATAAAATTTGTTTCTTGGCCC___________________________ __________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ATGCGATCGAGGAATGAATGCAAGAGTAGAAAAGGGAAGCGCAGTGAAGCTTGCAGGTGGGCTCGGAATGATAATGGCAAACACAGAAGAAAGTGGTGAGGAGCTGATTGCAGACTCTCATCTTATACCAGCTACTATGGTAGGCGAAATTGCTGGAAATCAGATCCGACAATATATCAAGTCGAATCAATTTCCTTCTGCAACAATTGTTTTCCATGGAACTGTAATTGGGACATCACCGCCAGCTCCTAAAGTTGCATCCTTTTCCAGCCGTGGTCCAAACCATTTAACACCGGAGATTTTGAAGCCAGATGTTATAGCTCCTGGAGTTAATATATTGGCTGGCTGGACAGGAGCTTCAGCTCCAACAGATTTGGACATTGATCCTAGAAGAGTTGAGTTTAACATAATTTCAGGTACCTCAATGTCCTGTCCCCATGTTAGTGGAATCGCTGCTTTGCTTCGAAAGGCATATCCAAATTGGTCACCTGCTGCTATAAAATCTGCTCTAGTGACCACCGCTTATAACTTGGATAATTCCGGCAAAAGCATTGTTGATCTTGCTAGTGGCAGTGAATCAACGCCCTTTGTTCATGGAGCT____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ TCAGGAAACTCAATGGCTCTTTCCTCCGTCCCTTTCCTTCGTCTCCTCCTCTTCTTCCTTTCTCTCACCCCTCTAGTCTTCTCTTCACCATTATCAAACCTTCCACAGACCTTCATCGTCCACGTCTCCAGATCTCACAAGCCAATCTTCTTCTCCTCTCACCATGATTGGTACACATCAATCCTCCTATCCCTGCCTCCCTCCCCCCACCCCACCAAGCTTATCTATACTTATGGCCGCGCCATCAATGGCTTCTCCGCCCATCTCACTGCAGCCCAGGCAGCGGAACTCCGCCGTGTTCCTGGGATCCTCTCTGTTATCCCAGACCAGATTCGCCAGCTCCACACCACCCGCACTCCTCACTTTTTAGGCCTTTCTACGGGGTCTGGCCTTTGGCCTAATTGTGCTTACGGTGAAGACGTGATTATTGGTGTTCTGGACACCGGAATATGGCCGGAACATCCTAGTTTCTCGGACTCTGGTCTGTCTCCTGTTCCTGATAATTGGAAAGGTATCTGCGAGACATCGTCCGATTTTCCTGCTTCTGCTTGTAATCGGAAACTCATCGGTGCAAGAGCCTTCTATAAAGGGTTTGTGTCCTATCAAGGTAAAGACATTGATGTATCAAGAGATTCAGCTTCTCCACGAGATACTGAAGGTCATGGAACCCACACAGCGTCCACTGCAGCTGGGTCCTTGGTTCATAACGCGAGCTTTTATGAATACGCGAGGGGAAAAGCTCGCGGTATGGCCTCAAAGGCAAGAATTGCTGCATATAAGATTTGTTGGAGCCTGGGTTGCTTTGACTCTGACATTCTTGCAGCCATGGATCAAGCCATTGCCGATGGTGTCCATGTGATTTCATTATCCGTTGGTGCCACCGGTTATGCTCCTCAATACGATCATGATTCGATAGCTATTGGGGCATTTGGAGCAACCCAACATGGAATTGTTGTTTCTTGCTCTGCTGGGAATTCAGGTCCAGATCCTTTTACGGCCGTTAATATTGCGCCTTGGATTCTCACTGTTGGTGCTTCCACCATCGATAGAGAGTTCCCAGCTGATGTTGTGCTGGGCGATGGGAGGATTTTTGGTGGGGTGTCGCTCTACTCCGGTGAGCCGCTAGCGAATGACAAGCTACCTTTGGTGTATGCTGGTGATATTGGAAGTAGATATTGTTTTGTGGGGAGTCTAAGCCCATCAAAAGTTCAGGGGAAAATTGTGGTATGCGATCGAGGAATGAATGCAAGAGTAGAAAAGGGAAGCGCAGTGAAGCTAGCAGGTGGGCTCGGAATGATAATGGCAAACACAGAAGAAAGTGGTGAGGAGCTGATTGCAGACTCTCATCTTATACCAGCTACTATGGTAGGCGAAATTGCTGGAAATCAGATCCGACAATATATCAAGTCGAATCAATTTCCTTCTGCAACAATTGTTTTCCATGGAACTGTAATTGGGACATCACCGCCAGCTCCTAAAGTTGCATCCTTTTCCAGCCGTGGTCCAAACCATTTAACACCGGAGATTTTGAAGCCAGATGTTATAGCTCCTGGAGTTAATATATTGGCTGGCTGGACAGGAGCTTCAGCTCCAACAGATTTGGACATTGATCCTAGAAGAGTTGAGTTTAACATAATTTCAGGTACCTCAATGTCCTGCCCCCATGTTAGTGGAATCGCTGCTTTGCTTCGAAAGGCATATCCAAATTGGTCACCTGCTGCTATAAAATCTGCTCTAGTGACCACCGCTTATAACTTGGATAATTCCGGCAAAAGCATTGTTGATCTTGCTAGTGGCAGTGAATCAACGCCCTTTGTTCATGGAGCTGGTCATGTGGATCCCAACAGTGCTCTTGATCCTGGATTGGTGTATGACATCAACACCGGTGACTATATTGCATTTCTCTGCACAATTGGGTATGATTCCAAGAGAATTGCAGTTTTTGTTCCAGGGGCTGCAACTGTGGATGCATGTGATCGAGAACTGGGTGGTCCAGGCAATCTCAATTACCCATCATTCTCTGTTGTTTTTGAGCCCACAACCAGTGTGGTTACACAGAAGAGGGTGGTGAAAAATGTTGGAAGTTCTGTTGATGCAATATATGAAGTCAAGGTGAATGCTCCTGCAAATATAGAGGTGAAGGTTTCACCAAGTAAGCTTGTGTTTAATGCAGAAAATCAGACATTGTCATATGATATTACATTCTCTAGTGGTAATTTGGATTGGTCTAGCATTAGCTCACAAAGTTTTGGATCAATTGAGTGGAGTGATGGAACTCATAGAGTTAGAAGTCCCATTGCTGTTAGGTGGAAGTGGAATCAAGGATCATCCAGGGCTTCCATTTGAGAATTTGGATTGTCCTCAACTTGTGTGGTTCTGTTTGCAATCTGTCAGGTCTGTTGTACAAAATTTATGGATACTGGTTTAGTTTTTAGTTTCACCAAGATTTCAAGGTGGAGCATTGATGTATTGCAGTATTCGGA*GCAATAAAATTTGTTTCTTGGCCCCCCTGC_____________________ TGAGGAAACTCAATGGCTCTTTCCTCCGTCCCTTTCCTTCGTCTCCTCCTCTTCTTCCTTTCTCTCACCCCTCTAGTCTTCTCTTCACCATTATCAAACCTTCCACAGACCTTCATCGTCCACGTCTCCAGATCTCACAAGCCAATCTTCTTCTCCTCTCACCATGATTGGTACACATCAATCCTCCTATCCCTGCCTCCCTCCCCCCACCCCACCAAGCTTATCTATACTTATGGCCGCGCCATCAATGGCTTCTCCGCCCATCTCACTGCAGCCCAGGCAGCGGAACTCCGCCGTGTTCCTGGGATCCTCTCTGTTATCCCAGACCAGATTCGCCAGCTCCACACCACCCGCACTCCTCACTTTTTAGGCCTTTCTACGGGGTCTGGCCTTTGGCCTAATTGTGCTTACGGTGAAGACGTGATTATTGGTGTTCTGGACACCGGAATATGGCCGGAACATCCTAGTTTCTCGGACTCTGATCTGTCTCCTGTTCCTGATAATTGGAAAGGTATCTGCGAGACATCGTCCGATTTTCCTGCTTCTGCTTGTAACCGGAAACTCATCGGTGCAAGAGCCTTCTATAAAGGGTTTGTGTCCTATCAAGGTAAAGACATTGATGTATCAAGAGATTCAGCTTCTCCACGAGATACTGAAGGTCATGGAACCCACACAGCGTCCACTGCAGCTGGGTCCTTGGTTCATAACGCGAGCTTTTATGAATACGCGAGGGGAAAAGCTCGCGGTATGGCCTCAAAGGCAAGAATTGCTGCATATAAGATTTGTTGGAGCCTGGGTTGCTTTGACTCTGACATTCTTGCAGCCATGGATCAAGCCATTGCCGATGGTGTCCATGTGATTTCATTATCCGTTGGTGCCACCGGTTATGCTCCTCAATACGATCATGATTCGATAGCTATTGGGGCATTTGGAGCAACCCAACATGGAATTGTTGTTTCTTGCTCTGCTGGGAATTCAGGTCCAGATCCTTTTACGGCCGTTAATATTGCGCCTTGGATTCTCACTGTTGGTGCTTCCACCATCGATAGAGAGTTCCCAGCTGATGTTGTGCTGGGCGATGGGAGGATTTTTGGTGGGGTGTCGCTCTACTCCGGTGAGCCGCTAGCGAATGACAAGCTACCTTTGGTGTATGCTGGTGATATTGGAAGTAGATATTGTTTTGTGGGGAGTCTAAGCCCATCAAAAGTTCAGGGGAAAATTGTGGTATGCGATCGAGGAATGAATGCAAGAGTAGAAAAGGGAAGCGCAGTGAAGCTAGCAGGTGGGCTCGGAATGATAATGGCAAACACAGAAGAAAGTGGTGAGGAGCTGATTGCAGACTCTCATCTTATACCAGCTACTATGGTAGGCGAAATTGCTGGAAATCAGATCCGACAATATATCAAGTCGAATCAATTTCCTTCTGCAACAATTGTTTTCCATGGAACTGTAATTGGGACATCACCGCCAGCTCCTAAAGTTGCATCCTTTTCCAGCCGTGGTCCAAACCATTTAACACCGGAGATTTTGAAGCCAGATGTTATAGCTCCTGGAGTTAATATATTGGCTGGCTGGACAGGAGCTTCAGCTCCAACAGATTTGGACATTGATCCTAGAAGAGTTGAGTTTAACATAATTTCAGGTACCTCAATGTCCTGCCCCCATGTTAGTGGAATCGCTGCTTTGCTTCGAAAGGCATATCCAAATTGGTCACCTGCTGCTATAAAATCTGCTCTAGTGACCACCGCTTATAACTTGGATAATTCCGGCAAAAGCATTGTTGATCTTGCTAGTGGCAGTGAATCAACGCCCTTTGTTCATGGAGCTGGTCATGTGGATCCCAACAGTGCTCTTGATCCTGGATTGGTGTATGACATCAACACCGGTGACTATATTGCATTTCTCTGCACAATTGGGTATGATTCCAAGAGAATTGCAGTTTTTGTTCCAGGGGCTGCAACTGTGGATGCATGTGATCGAGAACTGGGTGGTCCAGGCAATCTCAATTACCCATCATTCTCTGTTGTTTTTGAGCCCACAACCAGTGTGGTTACACAGAAGAGGGTGGTGAAAAATGTTGGAAGTTCTGTTGATGCAATATATGAAGTCAAGGTGAATGCTCCTGCAAATATAGAGGTGAAGGTTTCACCAAGTAAGCTTGTGTTCAATGCAGAAAATCAGACATTGTCATATGATATTACATTCTCTAGTGGTAATTTGGATTGGTCTAGCATTAGCTCACAAAGTTTTGGATCAATTGAGTGGAGTGATGGAACTCATAGAGTTAGAAGTCCCATTGCTGTTAGGTGGAAGTGGAATCAAGGATCATCCAGGGCTTCCATTTGAGAATTTGGATTGTCCTCAACTTGTGTGGTTCTGTTTGCAATCTGTCAGGTTTGTTGTACAAAATTTATGGATACTGGTTTAGTTTTTAGTTTCACCAAGATTTCAAGGTGGAGCATTGATGTATTGCAGTATTCGGATGCAATAAAATTTGTTTCTTGGCCCCCCTGCAAAAAAAAAAAAAAAAAATGC |
Primer
| Left Primer sequence | CAAGGATCATCCAGGGCTTC | |
| Left Primer start position | 904008 | |
| Left Primer sequence length | 20 | |
| Left Primer TM (DegC) | 61.900 | |
| Left Primer %GC | 55.000 | |
| Right Primer sequence | GCAATACATCAATGCTCCACC | |
| Right Primer start position | 903855 | |
| Right Primer sequence length | 21 | |
| Right Primer TM (DegC) | 60.354 | |
| Right Primer %GC | 47.619 | |
| Amplicon | CAAGGATCATCCAGGGCTTCCATTTGAGAATTTGGATTGTCCTCAACTTGTGTGGTTCTGTTTGCAATCTGTCAGGTCTGTTGTACAAAATTTATGGATA | |
| Amplicon length | 154 |
