Home > Keyword search > FF535883

Summary
Sequence ID FF535883
Sequence Length 771 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_021203 (FF535883)
 
 
Sequence
>FF535883
GGAGAACTCAAGATAAACAAGTTCAAACACTTCTCTTTTTCCTTCTCATTTCTCTCGTTTCTGCTTTACTATATGGACTG
GATTAGAGGCCCCACCTTAGGCCGTGGCTCCACCGCCACCGTCTCCCTCGGCAACTCTATCTCCGGTGACGTTTTTGCTG
TCAAGTCTGCTGAGCTTGACCAGTTCCAGTTCTTGCAAAGAGAGCAAAAGATTCTCTCTTCTTTAAGCTCTCCTTATGTA
GTTGGCTACAAGGGCTGTGACATTACTAGAGAGAACAACAAGGTTATGTACAATCTTTTCTTGGAGTACATTCCCGGCGG
TACACTTGCCGATAAAGTTAAGGCACACGGTGGCCGGCTGGAAGAATCGGTGATCGGATACTACACGGGTCAAATTGTTC
AAGGTCTGGATTATCTACATTCAAATGGCTGGGTTCATTGTGACATCAAAGGTAGGAATGTTTTAATAGGAGAAACTGGC
GCCAAACTTGCTGATTTTGGGTGTGCCAAAAGGGTCGATGCGGTGGAGGCAGCAACGCCAATTGGCGGCACGCCAATGTT
CATGGCACCAGAGGTGGCGCGTGGGGAGGAACAGGGTTGTTCTAGTGACATATGGGCTTTAGGGTGTACAATTATTGAAA
TGGCTAACGGTGGAGTAGTGTGGCCTGATGTCAATGATCCAGTTTCTGTCATGTACCGGATTGGATTTTCCGATCAGTTG
CCGGAGTTCCCATGTTGTCTATCAGAGCAAGCAAGAGATTTCTTGGACAGT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002524836.1| Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis] gb|EEF37556.1| Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis] 360 1e-97
  Manihot esculenta blastn  cassava4.1_008192m|PACid:17993843 1382 0.0
  FGENESH CDS blastn  scaffold05214_FGENESH26 1 exon (s) 327272 - 328555 1284 bp, chain - 1382 0.0
  Arabidopsis thaliana blastx  AT5G55090.1 | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448 274 5e-74
  Populus trichocarpa blastx  POPTR_0014s15310.1|PACid:18222326 345 2e-95
  Vitis vinifera blastx  GSVIVT01030452001|PACid:17836951 328 2e-90
  Ricinus communis blastx  30010.m000673|PACid:16815643 360 1e-100
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: FF535883_1_ORF1  Length: 257 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[33-256]T 2e-69 PD000001 O80888_ARATH_O80888;O80888_ARATH_O80888;
PS50011[27-257]T 34.195 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
SM00219[27-255]T 8.3e-08 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[27-255]T 4.2e-40 SM00220 no descriptionno description
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[2-255]T 1.7e-56 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017441
Conserved_site
Protein kinase ATP binding, conserved site
PS00107[33-55]? NA PS00107 PROTEIN_KINASE_ATPPROTEIN_KINASE_ATP
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[27-234]T 2.7e-49 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[106-255]T 1.4e-38 G3DSA:1.10.510.10 no descriptionno description
G3DSA:3.30.200.20[24-105]T 4.5e-06 G3DSA:3.30.200.20 no descriptionno description
PTHR22986[27-255]T 6.5e-105 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF58[27-255]T 6.5e-105 PTHR22986:SF58 MITOGEN ACTIVATED PROTEIN KINASE-RELATEDMITOGEN ACTIVATED PROTEIN KINASE-RELATED
seg[11-22]? NA seg segseg
Sequence: FF535883_2_ORF2  Length: 50 aa
noIPR
unintegrated
unintegrated
seg[18-29]? NA seg segseg
Sequence: FF535883_4_ORF2  Length: 51 aa
No hits reported.
Sequence: FF535883_4_ORF3  Length: 63 aa
No hits reported.
Sequence: FF535883_6_ORF2  Length: 92 aa
No hits reported.
Sequence: FF535883_6_ORF3  Length: 54 aa
No hits reported.