Sequence ID | FF535006 | |
Sequence Length | 804 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Corresponding scaffold | - | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_020949 (FF535006) |
>FF535006 GCATCTCTTGTGCATGATTCTTGATCTTAACCTCAACACAATCCTCAAGAAACCAACCAAAAAGAACTCACCCCACAAAT TAATTATGCCTGCTGCAGCTTCCCTGCAACTCCAAAGAACCACCGCTTTGCCTTGCCACAAGCAGCCTCAAACCACCATC AACTCTTGGCGGGTTCCTACTTCTTCGGTTCCTGACTACGTTTCTTGCTTCCATTCTCGTACCATGGGACCAAACCAGTG TTGCTCCGCCGTCGTCAAGACAATCAATGCACCTGTCTCCACTGTCTGGTCGGTGGTTCGCCGTTTTGATAACCCTCAAG CTTATAAACACTTTGTTAAGAGCTGCCATCTTATCAACGGAGATGGAGATGTAGGAACTCTCCGACAGGTTCATGTGGTG TCTGGACTCCCTGCTGAGTCAAGCACTGAAAGACTTGAGATTCTTGATGATTAACGTCATGTCTTGAGCTTTAGCGTGAT CGGCGGAAACCACAGGCTAAATAATTACTGGTCGGTGACCACCCTCCACTCTTCTTCAGGCGGAAATGGTACGGTTGTTA TAGAATCGTACTTTGTTGATATTCCTACAGGAAATACTAAGGAAGATACATGTGTTTTTGTCGATACAATTGTAAGATGC AACTTGGAATCTTTGGCTCAGATTGCTGAGAACATGGCCAAGAATACTCAATCATCATCATCATCATCATCTTGATTTTT TCATAATTATTTTTGTTTTTGATTCGGGTTTGGATCTGATCATGGATCATGGATTGCCAATCCCGAATTATGAAATTGGC TCTT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002520792.1| conserved hypothetical protein [Ricinus communis] gb|EEF41501.1| conserved hypothetical protein [Ricinus communis] | 307 | 1e-81 |
Manihot esculenta | blastn | cassava4.1_015315m|PACid:17983156 | 1298 | 0.0 |
FGENESH CDS | blastn | scaffold10689_FGENESH37 1 exon (s) 271945 - 272571 627 bp, chain + | 1172 | 0.0 |
Arabidopsis thaliana | blastx | AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050251-16050874 FORWARD LENGTH=207 | 249 | 2e-66 |
Populus trichocarpa | blastx | POPTR_0010s19120.1|PACid:18239920 | 329 | 2e-90 |
Vitis vinifera | blastx | GSVIVT01032747001|PACid:17838636 | 216 | 7e-57 |
Ricinus communis | blastx | 29729.m002290|PACid:16806939 | 307 | 3e-84 |
InterProScan |
GO:0006952
Biological Process defense response |
GO:0009607
Biological Process response to biotic stimulus |
Sequence: FF535006_1_ORF2 Length: 54 aa | |
No hits reported. |
Sequence: FF535006_2_ORF1 Length: 150 aa | |||||||
InterPro IPR000916 Family |
| ||||||
noIPR unintegrated |
|
Sequence: FF535006_2_ORF2 Length: 86 aa | ||||||||||
noIPR unintegrated |
|
Sequence: FF535006_3_ORF2 Length: 96 aa | |||||||
noIPR unintegrated |
|
Sequence: FF535006_3_ORF3 Length: 56 aa | |||||||
noIPR unintegrated |
|
Sequence: FF535006_4_ORF2 Length: 50 aa | |
No hits reported. |
Sequence: FF535006_4_ORF3 Length: 49 aa | |
No hits reported. |
Sequence: FF535006_5_ORF2 Length: 51 aa | |
No hits reported. |
Sequence: FF535006_5_ORF3 Length: 112 aa | |||||||
noIPR unintegrated |
|
Sequence: FF535006_6_ORF1 Length: 68 aa | |||||||
noIPR unintegrated |
|