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Summary
Sequence ID FF535006
Sequence Length 804 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_020949 (FF535006)
 
 
Sequence
>FF535006
GCATCTCTTGTGCATGATTCTTGATCTTAACCTCAACACAATCCTCAAGAAACCAACCAAAAAGAACTCACCCCACAAAT
TAATTATGCCTGCTGCAGCTTCCCTGCAACTCCAAAGAACCACCGCTTTGCCTTGCCACAAGCAGCCTCAAACCACCATC
AACTCTTGGCGGGTTCCTACTTCTTCGGTTCCTGACTACGTTTCTTGCTTCCATTCTCGTACCATGGGACCAAACCAGTG
TTGCTCCGCCGTCGTCAAGACAATCAATGCACCTGTCTCCACTGTCTGGTCGGTGGTTCGCCGTTTTGATAACCCTCAAG
CTTATAAACACTTTGTTAAGAGCTGCCATCTTATCAACGGAGATGGAGATGTAGGAACTCTCCGACAGGTTCATGTGGTG
TCTGGACTCCCTGCTGAGTCAAGCACTGAAAGACTTGAGATTCTTGATGATTAACGTCATGTCTTGAGCTTTAGCGTGAT
CGGCGGAAACCACAGGCTAAATAATTACTGGTCGGTGACCACCCTCCACTCTTCTTCAGGCGGAAATGGTACGGTTGTTA
TAGAATCGTACTTTGTTGATATTCCTACAGGAAATACTAAGGAAGATACATGTGTTTTTGTCGATACAATTGTAAGATGC
AACTTGGAATCTTTGGCTCAGATTGCTGAGAACATGGCCAAGAATACTCAATCATCATCATCATCATCATCTTGATTTTT
TCATAATTATTTTTGTTTTTGATTCGGGTTTGGATCTGATCATGGATCATGGATTGCCAATCCCGAATTATGAAATTGGC
TCTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002520792.1| conserved hypothetical protein [Ricinus communis] gb|EEF41501.1| conserved hypothetical protein [Ricinus communis] 307 1e-81
  Manihot esculenta blastn  cassava4.1_015315m|PACid:17983156 1298 0.0
  FGENESH CDS blastn  scaffold10689_FGENESH37 1 exon (s) 271945 - 272571 627 bp, chain + 1172 0.0
  Arabidopsis thaliana blastx  AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050251-16050874 FORWARD LENGTH=207 249 2e-66
  Populus trichocarpa blastx  POPTR_0010s19120.1|PACid:18239920 329 2e-90
  Vitis vinifera blastx  GSVIVT01032747001|PACid:17838636 216 7e-57
  Ricinus communis blastx  29729.m002290|PACid:16806939 307 3e-84
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: FF535006_1_ORF2  Length: 54 aa
No hits reported.
Sequence: FF535006_2_ORF1  Length: 150 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[105-149]T 9e-05 PD000531 Q945E9_ORYSA_Q945E9;Q945E9_ORYSA_Q945E9;
noIPR
unintegrated
unintegrated
SSF55961[78-150]T 2.9e-20 SSF55961 Bet v1-likeBet v1-like
Sequence: FF535006_2_ORF2  Length: 86 aa
noIPR
unintegrated
unintegrated
seg[80-86]? NA seg segseg
SSF55961[1-73]T 1e-08 SSF55961 Bet v1-likeBet v1-like
Sequence: FF535006_3_ORF2  Length: 96 aa
noIPR
unintegrated
unintegrated
seg[27-41]? NA seg segseg
Sequence: FF535006_3_ORF3  Length: 56 aa
noIPR
unintegrated
unintegrated
seg[4-18]? NA seg seg[20-25]? NA seg segseg
Sequence: FF535006_4_ORF2  Length: 50 aa
No hits reported.
Sequence: FF535006_4_ORF3  Length: 49 aa
No hits reported.
Sequence: FF535006_5_ORF2  Length: 51 aa
No hits reported.
Sequence: FF535006_5_ORF3  Length: 112 aa
noIPR
unintegrated
unintegrated
seg[72-86]? NA seg segseg
Sequence: FF535006_6_ORF1  Length: 68 aa
noIPR
unintegrated
unintegrated
seg[21-40]? NA seg segseg