Home > Keyword search > FF381646

Summary
Sequence ID FF381646
Sequence Length 685 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_020552 (FF381646)
 
 
Sequence
>FF381646
GAATAACGCAACGCATTGATGCACCAGCTCAAGTTGTATGGCCTTTCGTTCGAAGCTTTGAAAACCCACAAAAATACAAG
CACTTCATCAAGAGTTGCAACATGAGAGGCACTGGTGGTATAGGAAGTATAAGAGAAGTTACAGTAGTTTCTGGCCTACC
AGCTTCTACGAGCACTGAAAGGCTAGAGATTTTGGACGATGAGAAGCATATTTTAAGCTTTAGGGTGGTCGGAGGTGAAC
ACCGGCTGAATAATTATCGGTCTGTAACATCGGTTAATGAGTTTTGTAAGGATGGAAAGATTTATACAATTGTTTTGGAG
TCTTATATAGTTGATATACCAGAAGGAAATACTGGGGAGGATACGAAGATGTTTGTAGACACTGTTGTTAAGTTGAATCT
TCAAAAGCTGGCTGTTGTAGCAATGGCTTCTGTGCATGGGCATGAATAATTATGATGGAGTGGTGGTGGTGGAAGTGGCG
GTGGCAGGAGCCGTGATGATGATGGCTGCTGGGTTCTCATTGATATGATGATGTCTGATCTCAGTGGTTAGTATGGGGTT
TTGCAAGTTGGGTTTTTTTATTTTGTTTTTCGTTTGTTATTTTATGAAGGCAATTAGTATTGGTTTGTATATTTTAATCT
TAATATTGGGTAAGTTCAGTTACAAAGTTATGGGCTATTGTTTGG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002516457.1| conserved hypothetical protein [Ricinus communis] gb|EEF45798.1| conserved hypothetical protein [Ricinus communis] 278 5e-73
  Manihot esculenta blastn  cassava4.1_017054m|PACid:17972120 872 0.0
  FGENESH CDS blastn  scaffold00206_FGENESH1 1 exon (s) 10882 - 11448 567 bp, chain - 872 0.0
  Arabidopsis thaliana blastx  AT2G26040.1 | Symbols: PYL2, RCAR14 | PYR1-like 2 | chr2:11094832-11095404 REVERSE LENGTH=190 215 2e-56
  Populus trichocarpa blastx  POPTR_0018s05090.1|PACid:18214736 262 2e-70
  Vitis vinifera blastx  GSVIVT01035362001|PACid:17840529 271 2e-73
  Ricinus communis blastx  29794.m003335|PACid:16808696 278 2e-75
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: FF381646_1_ORF2  Length: 51 aa
noIPR
unintegrated
unintegrated
seg[30-40]? NA seg segseg
Sequence: FF381646_3_ORF1  Length: 148 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[30-122]T 0.0003 PD000531 Q75T32_DAUCA_Q75T32;Q75T32_DAUCA_Q75T32;
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[22-115]T 3.1e-06 G3DSA:3.30.530.20 no descriptionno description
SSF55961[1-142]T 1.3e-31 SSF55961 Bet v1-likeBet v1-like
Sequence: FF381646_5_ORF2  Length: 74 aa
noIPR
unintegrated
unintegrated
seg[11-26]? NA seg seg[41-56]? NA seg segseg
Sequence: FF381646_6_ORF2  Length: 78 aa
No hits reported.