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Summary
Sequence ID FF381255
Sequence Length 723 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_020446 (FF381255)
 
 
Sequence
>FF381255
GCTAATTATTACTCTCTTCATTTGCTTTGTTTCAACTTTCAAAGTTAGCTGAAATGGCATATGTCACTGCCAATGCTGGA
GTTAAAGTTCAAATCAAGAGTCAATCAAATGATTTCTGGAATGCTATTACCAATAACCAATTTCTTGTTGATGCCATTCC
TGACCTATATGAATCAATAGTTTTTCCAACTCCTAGTAATCTTCAAGTGCGCAAAATCACGTATGGCCCAAGTTCTCAAA
ACATCAAAACCTCGACTGAACGTGTCATTGAGAACAGTGATGAGAAATTTATTTACACTGTAGTTGCTGGTGACATCCTT
ACCAAATATGAAGTCAGCGACTTTCGAGCTACGATAAGTTACCCTGCTGACAAATGGGTGGAATGGACCTGGACCTATAA
ATATTTGAAGGACGGGAAAAGCAAGGCTCTTGACCTTGATGTAGAGATCGCAGACATTGTGCTTAAGAGCCTATCAAAAC
TTGATGCCTTTATTCAAAAGAAGAAACTCTGAATTGCATGTTTACTGTTGCACGTCTCTGTGTGGTATGCTAAATAAAGC
AGAATCCTACTTCTGCTTAACGCTCTATGTTTTATCCTAGTCGTGTTTGTGTTATGCTTGCTACGTGTTGTATTAAATAA
AGCAGAGTCCTATCGTGCTTAATGCTCTGCACTTTATTTGCTTGTATTAAAATAAAAATCCAACTTTAGTTGCTTGTTCT
TCC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002531397.1| conserved hypothetical protein [Ricinus communis] gb|EEF30981.1| conserved hypothetical protein [Ricinus communis] 91.7 9e-17
  Manihot esculenta blastn  cassava4.1_018318m|PACid:17992756 791 0.0
  FGENESH CDS blastn  scaffold02618_FGENESH4 2 exon (s) 49171 - 49738 459 bp, chain + 791 0.0
  Arabidopsis thaliana blastx  AT1G24020.2 | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155 51.6 5e-07
  Populus trichocarpa blastx  POPTR_0010s10600.1|PACid:18240309 55.5 4e-08
  Vitis vinifera blastx  GSVIVT01020183001|PACid:17829649 57.4 6e-09
  Ricinus communis blastx  29168.m000374|PACid:16802390 91.7 3e-19
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
detail
Sequence: FF381255_1_ORF2  Length: 51 aa
No hits reported.
Sequence: FF381255_3_ORF1  Length: 168 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[37-162]T 0.002 PD000531 Q9LR93_ARATH_Q9LR93;Q9LR93_ARATH_Q9LR93;
noIPR
unintegrated
unintegrated
seg[1-15]? NA seg segseg
SSF55961[20-165]T 0.00012 SSF55961 Bet v1-likeBet v1-like
Sequence: FF381255_5_ORF2  Length: 51 aa
No hits reported.
Sequence: FF381255_6_ORF2  Length: 98 aa
No hits reported.