Home > Keyword search > DV457011

Summary
Sequence ID DV457011
Sequence Length 469 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_019597 (DV457011)
 
 
Sequence
>DV457011
TCAAGATTTGGCACTACACTTTAGATGGGAAATCTGGGGTGTTCAAAGAGCGAATCGAAATCGATGAAGAGAATAAAATA
GTAAAGCTTATTGGTTTGGAAGGTGATGTGTTCAAGTTTTACAAGGTGTATAATGGAATCTGGCACATTACGCCCAAACC
TGAAGGTTGCTCGGCGAAATTGACTATTGAATATGAGAAGCTAAACGAGACTTCCCCAGATCCTCATATTTACTTGGATT
TCATTACTAGAATGACCAAGGATATCGATGCAGGCCTTGTGCAGGCTTAATATATATGCTGGCCATCAGAAGATGATCCA
TAAATCTTCTATATGTCTTCATAATAAAAGCATATGTTAAAAGCTGCATGCTCATTTGGGTTATGTAATGTGAGTGGTTT
TTAATTATGTGTTGTTGATTATGGTGTCCTGTAAAAGTATTAATGAAATCAATGAGAAGCTTTGATTGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002526036.1| Major latex protein, putative [Ricinus communis] gb|EEF36376.1| Major latex protein, putative [Ricinus communis] 139 2e-31
  Manihot esculenta blastn  cassava4.1_018302m|PACid:17969713 527 1e-149
  FGENESH CDS blastn  scaffold04716_FGENESH16 2 exon (s) 90651 - 91203 459 bp, chain - 527 1e-149
  Arabidopsis thaliana blastx  AT3G26450.1 | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr3:9681593-9683299 REVERSE LENGTH=152 85.1 2e-17
  Populus trichocarpa blastx  POPTR_0008s13040.1|PACid:18248841 124 2e-29
  Vitis vinifera blastx  GSVIVT01011726001|PACid:17823517 87.4 3e-18
  Ricinus communis blastx  29816.m000695|PACid:16809607 139 8e-34
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: DV457011_3_ORF1  Length: 95 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[16-89]T 8e-07 PD000531 Q9LR93_ARATH_Q9LR93;Q9LR93_ARATH_Q9LR93;
PF00407[1-95]T 9.9e-11 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[9-93]T 5.7e-18 G3DSA:3.30.530.20 no descriptionno description
SSF55961[15-95]T 4e-24 SSF55961 Bet v1-likeBet v1-like
Sequence: DV457011_4_ORF1  Length: 73 aa
No hits reported.
Sequence: DV457011_6_ORF2  Length: 59 aa
No hits reported.