Home > Keyword search > DV456501

Summary
Sequence ID DV456501
Sequence Length 529 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_019502 (DV456501)
 
 
Sequence
>DV456501
TCAGCGATTGGCAAGTTCAAAAGAACCTTCACTGAAAGATCTACAGGAATTAGCAGCTCGACTCTTCTCTAAAGGCAAGG
CAAAACCTGAAGGAACACAGAATGCAAATGCAGAAGCTGAAAACAAGAAGAAGCAACAAAATAAGGAATACAATTCAAAT
GCGAATTTAAGCCCGCTTGCGAGGTTTTTACTCTCGAGATGGCAAAGCCAAGTTTCAAGGGACGTCAATCCAACTTAAAA
GAGGAGGTTGGAGCTGGGTCACAACTTCGTTTATTAGCGTGTTTCTTTTCTTTTTATGCTTTCTCTCAGTTTTGATGTAC
ATAACATTGTAAGAAATTGTGCATTTATTATCTATTATCTATTATTTATTATGATTATTTTTTTCCCTTTCTATAGTTTT
ATTTGCAGGGGCGAATTGCTGTATAATTAGGGGTTTGCTATTGGCATATTAACAATGTAATTTTAGCATAACATTAATTG
TATTTATTAATACATTTTGGTAAAAAATTTTGTTAGTAACGTTTGTCCC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002285128.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] 121 5e-26
  Manihot esculenta blastn  cassava4.1_002731m|PACid:17987207 472 1e-132
  FGENESH CDS blastn  scaffold03741_FGENESH97 19 exon (s) 653894 - 664333 2040 bp, chain - 472 1e-132
  Arabidopsis thaliana blastx  AT1G53165.3 | Symbols: ATMAP4K ALPHA1 | Protein kinase superfamily protein | chr1:19814386-19819233 FORWARD LENGTH=688 79.0 2e-15
  Populus trichocarpa blastx  POPTR_0001s40800.2|PACid:18236900 120 6e-28
  Vitis vinifera blastx  GSVIVT01014297001|PACid:17825312 121 2e-28
  Ricinus communis blastx  29768.m000106|PACid:16808243 111 2e-25
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: DV456501_1_ORF2  Length: 56 aa
No hits reported.
Sequence: DV456501_2_ORF1  Length: 78 aa
noIPR
unintegrated
unintegrated
coil[36-57]? NA coil coiled-coilcoiled-coil
seg[33-49]? NA seg segseg
Sequence: DV456501_2_ORF2  Length: 50 aa
noIPR
unintegrated
unintegrated
seg[23-39]? NA seg segseg
Sequence: DV456501_3_ORF2  Length: 53 aa
noIPR
unintegrated
unintegrated
seg[33-48]? NA seg segseg
Sequence: DV456501_4_ORF2  Length: 77 aa
noIPR
unintegrated
unintegrated
seg[30-46]? NA seg segseg
Sequence: DV456501_6_ORF2  Length: 51 aa
No hits reported.