Home > Keyword search > DV451360

Summary
Sequence ID DV451360
Sequence Length 745 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_018473 (DV451360)
 
 
Sequence
>DV451360
GCCACTTTTTCAACCAAAGTTTCTGCTTGACTCGGACCTTTCTTCGTTTGTTTCTTTTTCTCCCTTTTTTATGATGCCAA
GCGCAAGCCCTGATCCATCCGATAAGGACGGAGAACCCTTCGTTGAGATCGATCCCACTGGACGTTATGGCCGTTACAAT
GAACTACTGGGCTCCGGCGCAGTGAAAAGAGTTTACCGGGCATTTGTTCAAGAAGAAGGGATAGAGGTTGCATGGAACCA
AGTCAAATTAAGAAGCTTCTCTAACGATCCCATCATGATCGACAGGCTTTACTCTGAGGTTCGATTGTTAAGAAGCTTAA
CCAACAAGAATATTATTTCTCTGTACAATGTGTGGCGAGACGAAGATCATAATAATTTGAATTTCATAACCGAAGTTTGT
ACTTCTGGGAATTTGAGGGAGTACAGGAAGAAACACAGGCAAGTTTCAATGAAGGCATTAAAGAAATGGTCCAAACAAAT
CTTGAAAGGCTTGAATTATTTGCATACGCATGAGCCTTGCATCATCCACAGAGATCTCAATTGCAGCAACTTGTTTGTTA
ATGGAAATATTGGCCAGGTTAAGATTGGTGATCTTGGATTGGCTGCTATAGTGGGGAAAAGCCATTCAGCTCATTCAATT
CTTGGGACACCAGAATTCATGGCACCAGAGCTGTATGAGGAGAATTACACAGAAATGGTGGACATATATTCATTTGGTAT
GTGTGTGTTAGAGATGGTGACTTTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  gb|AAP36697.1| MAP kinase-like protein [Gossypium hirsutum] 419 1e-115
  Manihot esculenta blastn  cassava4.1_012719m|PACid:17967510 1306 0.0
  FGENESH CDS blastn  scaffold03332_FGENESH40 2 exon (s) 309905 - 310896 903 bp, chain - 1300 0.0
  Arabidopsis thaliana blastx  AT5G55560.1 | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314 390 1e-109
  Populus trichocarpa blastx  POPTR_0014s16200.1|PACid:18223999 372 1e-103
  Vitis vinifera blastx  GSVIVT01037773001|PACid:17842290 399 1e-112
  Ricinus communis blastx  27613.m000637|PACid:16798811 416 1e-117
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: DV451360_2_ORF1  Length: 248 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[54-247]T 1e-67 PD000001 Q8S8Y8_ARATH_Q8S8Y8;Q8S8Y8_ARATH_Q8S8Y8;
PS50011[50-248]T 34.817 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
SM00219[50-248]T 2.7e-08 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[50-248]T 5.4e-16 SM00220 no descriptionno description
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[38-247]T 1.1e-51 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[50-247]T 7.1e-38 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[132-247]T 3.2e-31 G3DSA:1.10.510.10 no descriptionno description
G3DSA:3.30.200.20[40-131]T 2.4e-19 G3DSA:3.30.200.20 no descriptionno description
PTHR13902[52-247]T 6.1e-104 PTHR13902 SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATEDSERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED
PTHR13902:SF12[52-247]T 6.1e-104 PTHR13902:SF12 SERINE/THREONINE-PROTEIN KINASE WNK-RELATEDSERINE/THREONINE-PROTEIN KINASE WNK-RELATED
seg[5-36]? NA seg segseg
Sequence: DV451360_5_ORF2  Length: 55 aa
No hits reported.
Sequence: DV451360_5_ORF3  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[32-54]? NA seg segseg
Sequence: DV451360_6_ORF2  Length: 57 aa
No hits reported.