Home > Keyword search > DV445153

Summary
Sequence ID DV445153
Sequence Length 707 nucleotides
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Gbrowse Rco  -
Gbrowse Ptr  -
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Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_016933 (DV445153)
 
 
Sequence
>DV445153
AGAGAAGAACAACTCACATTTCGTTGGTAAAAACAAAAGATGTACAAATACTTATACTATTTTTTAAGCTCTCCAACCCT
TTTTTAGCTAAGCGGCAATTCAACCTTTTTATAAGGAAAGAAAAGTCTTTTAAAAGTTACTTATTAACACTTTCGTTTAA
TGTTACTGGACTGGTGTTGAAAATGTTTTAGAAAATAATTCTTCTCTGATCTGGTTTCATTAGCATAATCATGATTAGTA
TTGCTATTCTTATTAGATCGTAATATGAAATTAACTATGTTGAGTGCTTGGCAGGTTAATCGACAAAGAGTTAGTATTAC
AGAATGGCAAGAGGGTGAGTTTTTGGGACAGGGGGGTTTTGGAAAAGTGTACGAAGGATATGCTCCTGGTGGTTTCTTTT
TTGCCTACAAGGAAATAGAAATTGAAAATGGGGGGACGATTGAGGAAATTATTCATGAGGTTGATTTATTAAGTCAATTG
AGACATCCAAACATAGTAAGGTATTATGACACGGAGAGGCGTGGATCGAAGCTCTATATTTTTCTTGAAATTGTAAGACC
AGGTTCCCTCAAACAAATATACAAAAAGGGCTTCAAACTGGAAGATTCCCAAGTGTCCCACTACACCAAACAAATACTTG
AAGGTTTGAATTATCTCCATGGGCTAAGTGTGGCCCACAGGGATATCAAATGTGCAAATATATTGGT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002452889.1| hypothetical protein SORBIDRAFT_04g034410 [Sorghum bicolor] gb|EES05865.1| hypothetical protein SORBIDRAFT_04g034410 [Sorghum bicolor] 150 1e-34
  Manihot esculenta blastn - - -
  FGENESH CDS blastn  scaffold09809_FGENESH20 3 exon (s) 511981 - 515948 2811 bp, chain + 478 1e-134
  Arabidopsis thaliana blastx  AT4G08500.1 | Symbols: MEKK1, ATMEKK1, MAPKKK8, ARAKIN | MAPK/ERK kinase kinase 1 | chr4:5404272-5407062 REVERSE LENGTH=608 141 4e-34
  Populus trichocarpa blastx  POPTR_0005s16210.1|PACid:18206854 150 9e-37
  Vitis vinifera blastx  GSVIVT01023079001|PACid:17831673 150 5e-37
  Ricinus communis blastx  29908.m006213|PACid:16813029 148 2e-36
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: DV445153_1_ORF2  Length: 158 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[45-158]T 6e-26 PD000001 Q7XTK4_MEDSA_Q7XTK4;Q7XTK4_MEDSA_Q7XTK4;
PS50011[31-158]T 27.072 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[31-158]T 7.9e-08 SM00220 no descriptionno description
InterPro
IPR008271
Active_site
Serine/threonine protein kinase, active site
PS00108[146-158]? NA PS00108 PROTEIN_KINASE_STPROTEIN_KINASE_ST
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[17-158]T 8.5e-39 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[31-158]T 9.2e-35 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:3.30.200.20[25-158]T 1e-28 G3DSA:3.30.200.20 no descriptionno description
PTHR22986[30-158]T 1.7e-42 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF63[30-158]T 1.7e-42 PTHR22986:SF63 MITOGEN ACTIVATED PROTEIN KINASE-RELATEDMITOGEN ACTIVATED PROTEIN KINASE-RELATED
seg[32-43]? NA seg seg[60-73]? NA seg segseg
Sequence: DV445153_3_ORF1  Length: 62 aa
No hits reported.
Sequence: DV445153_4_ORF2  Length: 64 aa
No hits reported.
Sequence: DV445153_4_ORF3  Length: 64 aa
No hits reported.
Sequence: DV445153_6_ORF2  Length: 86 aa
noIPR
unintegrated
unintegrated
seg[15-26]? NA seg segseg