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Summary
Sequence ID DV444397
Sequence Length 597 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_016745 (DV444397)
 
 
Sequence
>DV444397
AGCTAGAGACTGAAGTAGAGGTCAAAGTATCCGCNNNTAAGGCCTTCGGCATATTTAAAGGCCAAATGCACCAACTTCCC
AACATCGCGCCTGACATAGTGCACAAAGCTGAGATTCATGAAGGCAACTGGGAGACTCCAGGCTCCATCAAGCACTGGAA
TTATACCATAGATGGTAACGTTCTGAGTCTGAAGGAGAAGGTTGAGAAAATAGACGAGGAGAACAAATCTATCACCTTTA
AGATTGTGGATGGAGAAGTGTTGAAGCTTTACAAGAACATGAAGGTGACCGTTCAAGTAACTGCAAAAAATGATGAAACC
AGCTTCATGAAAATGATCATTGATTATGAGAAAGCAAAGGAGGATTCGGCTGATCCACATTCTTACTTGGAATTTGGTAC
CAAGGTGTTTCAGTATATCGAGAATCATCTCCTCAAGGCCTAGCCCTAATTAATTAATTAATCAATGTGCTTGCCTTGAA
TAAGTATGTTTAATAATTAAGAGATGTGTTCATTAAGTTTGCTCAATATGTATTATGTTTGTGGGTTCCGTTTTCATGGA
TGTAGATTTTGTGCTTCTAATAAATTTCGNNNTTGTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002284516.1| PREDICTED: hypothetical protein [Vitis vinifera] 172 2e-41
  Manihot esculenta blastn  cassava4.1_018310m|PACid:17969717 829 0.0
  FGENESH CDS blastn  scaffold04716_FGENESH14 2 exon (s) 81808 - 82352 459 bp, chain + 829 0.0
  Arabidopsis thaliana blastx  AT1G70850.3 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715429-26716744 REVERSE LENGTH=316 122 2e-28
  Populus trichocarpa blastx  POPTR_0008s13050.1|PACid:18248779 126 1e-29
  Vitis vinifera blastx  GSVIVT01011726001|PACid:17823517 172 8e-44
  Ricinus communis blastx  27903.m000017|PACid:16799453 127 4e-30
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: DV444397_3_ORF1  Length: 146 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[26-142]T 4e-11 PD000531 Q8L9L8_ARATH_Q8L9L8;Q8L9L8_ARATH_Q8L9L8;
PF00407[1-146]T 3.6e-59 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[1-144]T 9.5e-27 G3DSA:3.30.530.20 no descriptionno description
SSF55961[1-145]T 1.2e-37 SSF55961 Bet v1-likeBet v1-like
Sequence: DV444397_6_ORF2  Length: 148 aa
noIPR
unintegrated
unintegrated
seg[75-86]? NA seg segseg