Home > Keyword search > DV444251

Summary
Sequence ID DV444251
Sequence Length 600 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_016708 (DV444251)
 
 
Sequence
>DV444251
AAGATGCTAGTCTTTGATCCAAACAGGCGCATTANNNNTGATGGGGCACTATGCCATCCTTACTTGGCACCTCTTCATGA
TATCAACGAGGAGCCTGTTTGCCCAAAGCCTTTCAACTTTGATTTTGAGCAGCCAACATTTACTGAAGAAAATATCAAGG
AGCTCATCTGGAGGGAATCTGTAAAATTCAATCCAGATTTCTGAGAATTATCTGATATAATCTGTTGTGCACACTTGGAA
AATACTCCATTATCCCCATTCCTGTCAGAGTCTCTGGGAGAAGATGAAAACAACTCGCTGGGTATATTGGAATGGACTTG
CATGTCACGAAAGAGTTGGTTCCTTTCATCTTGGATTATTTGAGATATTGACATGTGTGAAATGGAGGTTAGGTTGCCTT
CAGGTTACGTCAGAAAAATCACTGTAAAGGTCTAATTTGTAGCTGGTATGTATGGGAACACCAACTTGATTTAGTGTGGG
TGGAGTGGCTGTTGTACTGGCAATATGTACTGTTTTGGAGTNNNGTTTCTGCATAGTTATTCTAATTTTCCTACTTCTCT
TCCCTTGGAATGATTTGAATGTGAAGAATTCTCTGATTTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002511904.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF50573.1| big map kinase/bmk, putative [Ricinus communis] 135 4e-30
  Manihot esculenta blastn  cassava4.1_009957m|PACid:17978589 381 1e-105
  FGENESH CDS blastn  scaffold02658_FGENESH104 6 exon (s) 728416 - 732230 1119 bp, chain + 381 1e-105
  Arabidopsis thaliana blastx  AT4G01370.1 | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 123 8e-29
  Populus trichocarpa blastx  POPTR_0014s08450.1|PACid:18222776 129 2e-30
  Vitis vinifera blastx  GSVIVT01026984001|PACid:17834523 130 3e-31
  Ricinus communis blastx  30174.m008647|PACid:16822293 135 1e-32
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
detail
Sequence: DV444251_1_ORF1  Length: 67 aa
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-53]T 6.9e-05 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
PD054205[26-63]T 3e-16 PD054205 Q8GZR5_MALMI_Q8GZR5;Q8GZR5_MALMI_Q8GZR5;
Sequence: DV444251_1_ORF2  Length: 52 aa
No hits reported.
Sequence: DV444251_2_ORF2  Length: 57 aa
No hits reported.
Sequence: DV444251_2_ORF3  Length: 68 aa
No hits reported.
Sequence: DV444251_4_ORF1  Length: 66 aa
No hits reported.
Sequence: DV444251_4_ORF2  Length: 52 aa
No hits reported.
Sequence: DV444251_5_ORF2  Length: 55 aa
No hits reported.
Sequence: DV444251_6_ORF2  Length: 109 aa
noIPR
unintegrated
unintegrated
seg[7-18]? NA seg segseg