Home > Keyword search > DV444113

Summary
Sequence ID DV444113
Sequence Length 415 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_016679 (DV444113)
 
 
Sequence
>DV444113
ATTTGATCCCAGGCTGAGGATTACAGTTGAGGATGCGCTTGCTCATCCCTACCTAACGTCACTTNNNNATATCAGCGATG
AGCCAGTGTGCATGACTCCCTTCAGCTTTGATTTTGAGCAGCATGCGTTAACCGAAGAACAGATGAAGGAGCTGATTTAT
AGGGAGGCTCTTGCATTTAACCCTGAGTATCAGCAGCAATAATAAAAACTCACTAATTATATCATCCTATTCATTGTGGA
TTTTAATCATCAGTGTGGTTTCTGTTGCACGGTTTTCAGTGATTTTATTTCTTCATGTATATATATGTTCCACCAAAACT
GGGTGGGTTGGTTCTTGAATTGAAATATNNNATTATGGGCCGACCTTTCGAACTAGGACTGTTGGAATGGTATTTGAATC
GCTAGTCTTTGCTTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  gb|AAF65766.1|AF242308_1 mitogen-activated protein kinase [Euphorbia esula] 130 5e-29
  Manihot esculenta blastn  cassava4.1_012694m|PACid:17979977 377 1e-104
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx  AT2G43790.1 | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395 112 8e-26
  Populus trichocarpa blastx  POPTR_0017s04290.1|PACid:18209883 129 1e-30
  Vitis vinifera blastx  GSVIVT01038192001|PACid:17842573 121 1e-28
  Ricinus communis blastx  29747.m001048|PACid:16807714 129 4e-31
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: DV444113_2_ORF1  Length: 66 aa
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-65]T 9.1e-05 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
PD054205[24-59]T 1e-14 PD054205 Q9M534_EUPES_Q9M534;Q9M534_EUPES_Q9M534;
Sequence: DV444113_3_ORF2  Length: 60 aa
noIPR
unintegrated
unintegrated
seg[10-37]? NA seg segseg