Home > Keyword search > Contig11317

Summary
Sequence ID 
Sequence Length 896 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold09029
Probe ID of RIKEN ver.1 microarray  -
 
 
Sequence
>Contig11317
GGGAAGGGGACAAGGAATTTTCGCAATCTATTCTTGATGAGCGAACAAAGAAAGCAGAAGCTTGGCACCGTGAAGCTGCT
GCTCGAGCACAATACACCAAGCCAGCACCACCTATCACCTGTGCTACTTTTGCTCAAGATGTTCTAGAAGGGAGAGCAAA
CGTTTTGCAGGCACATGATCACAAGCACCAGCCAATGATATTTGGACCGGCAAGTCTTGTAGGTGGAAGTCTAACAAGTG
AAAGGGAAAGGATGGCAGCACAAGTATTCCAACCTAGCCACAGGATGCCAACCATGAGTATAGAAGAAGCTGGGTTGAGG
GAGATGGAGATCATGAATAAATGGCAAGAGAGAAATGCTAAACTCATGGCAGAAGCCAACTCTGCATGGTACAAGGACGG
TCCAAAGGTAAAATCTGGTGAAGAAGAAGATGATGAAGATGATGATGCAGCTGTACAGAAGGCAAGGGCATGGGATGACT
GGAAAGATGATAATCCTCGGGGTGCTGGTAATAAGAAGCTCACCCCCTGCGGTTAAAGGTGGCGTCTTTGGAACATCGTT
AAAGATTTTGCAGACATTCATTTAAATCCTAGCTTCTGATATGTTTGTTCAACAAAATTTTGGTTCAATGTCTGTTTATC
CCAGTGTTGCCTTAATCCTTGAAACAGTCAGGGCCCTGATTCTGTGTGCACGTTCTGACTTGTGTGGGAAATATCAGCTG
CCAGATCAACAGAGTTAACTGGATCTTATGGGTAATATCCCGTGTGTAGTATAATGTGTGAGGACACATTTCTGGATATT
TTGTTTCTTTACTTCAAACAAATTTGGTTGTTTTTTACTTGATTATTAGAGCAAATCTATTATTTAATTTTAATTTAAAA
AATAAAATTTATTAGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002318432.1| predicted protein [Populus trichocarpa] >gi|... 315 5e-84 >ref|XP_002318432.1| predicted protein [Populus trichocarpa] gb|EEE96652.1| predicted protein [Populus trichocarpa] 315 5e-84
  Manihot esculenta blastn  cassava4.1_008938m|PACid:17985398 1029 0.0
  FGENESH CDS blastn  scaffold02598_FGENESH9 11 exon (s) 91741 - 95263 1443 bp, chain - 1029 0.0
  Arabidopsis thaliana blastx  AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485654-21487869 REVERSE LENGTH=405 270 1e-72
  Populus trichocarpa blastx  POPTR_0012s02360.1|PACid:18230480 315 2e-86
  Vitis vinifera blastx  GSVIVT01038559001|PACid:17842795 306 8e-84
  Ricinus communis blastx  29475.m000231|PACid:16802916 281 3e-76
 
 
Gene Ontology 
InterProScan
GO:0009607
Biological Process
response to biotic stimulus
GO:0009966
Biological Process
regulation of signal transduction
 
 
InterProScan result 
Sequence: Contig11317_1_ORF2  Length: 57 aa
noIPR
unintegrated
unintegrated
seg[4-12]? NA seg segseg
Sequence: Contig11317_1_ORF3  Length: 50 aa
No hits reported.
Sequence: Contig11317_3_ORF1  Length: 177 aa
InterPro
IPR007304
Family
TAP42-like protein
PTHR10933[1-177]T 2.8e-99 PTHR10933 IMMUNOGLOBULIN-BINDING PROTEIN 1-RELATEDIMMUNOGLOBULIN-BINDING PROTEIN 1-RELATED
PF04177[21-165]T 2.9e-62 PF04177 TAP42TAP42
noIPR
unintegrated
unintegrated
PTHR10933:SF3[1-177]T 2.8e-99 PTHR10933:SF3 SUBFAMILY NOT NAMEDSUBFAMILY NOT NAMED
seg[18-29]? NA seg seg[140-148]? NA seg segseg
Sequence: Contig11317_4_ORF1  Length: 53 aa
No hits reported.
Sequence: Contig11317_4_ORF2  Length: 51 aa
noIPR
unintegrated
unintegrated
seg[24-34]? NA seg segseg
Sequence: Contig11317_5_ORF2  Length: 117 aa
noIPR
unintegrated
unintegrated
seg[30-38]? NA seg segseg
Sequence: Contig11317_6_ORF2  Length: 116 aa
noIPR
unintegrated
unintegrated
seg[46-54]? NA seg segseg