Summary
| Sequence ID | ||
| Sequence Length | 680 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | Mapped | |
| Gbrowse Ptr | Mapped | |
| Gbrowse Vvi | - | |
| Gbrowse Ath | - | |
| Corresponding scaffold | - | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_013145 (Contig11277) |
| >Contig11277 GGAATTACACAAAAACCAGTATGCGAGGTCTACAATCAGTAGAGACTCCAGTTGGAGTTCCGGCCGACGTCGTTTGGGAT GCTTATCGTGGTCTTGAGCTGGGAAGGCTCGTCGATCAACTTCTGCCTGACGTTATTGGCAAAGTAGAGGTTGTGCAAGG TGATGGAGGCGTCGGTACTATCGTCAAACTTACATTTCCTGCTGGAACTCCTGGAGTAGGTTACCTGAAGGAAATATTTA CAAAGATTGATGATGATGATCGTGTGAAGGAAACAGAAATCATAGAAGGAGGTTACAAAGATCTTGGCTTTGATCTTTTT CGTTGTCGCTTGGAGATCATTGAGAAGGATGCTGAATCAAGTATCATCAGATCCACATTAGAGTATGAGATAGATGACAC CAAACCTGAACTTGCGTCTTTAGTCTCCACCAAACAATTTGAGATTATGGCAGAAACTGTTGGGAAATATCTGGCTGACA AGAAATCCATCTCATAGACACAGAGTCCATACTCTTCTGATGCATTTTCCCTACTTTTCATGACAAAGTAGGCAACGATA TATATTCAGAAATAAATTAATAATACTTCAAAGTTCTGCAGCGAATGCTTTGTTAAGCTAGCACATTGTTGTATAAGATC TTCTCTGTCTCAACGTTCAATAAAGTCATCAATTTTCAAC |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ref|XP_002520059.1| conserved hypothetical protein [Ricinus communis] gb|EEF42383.1| conserved hypothetical protein [Ricinus communis] | 255 | 4e-66 |
| Manihot esculenta | blastn | cassava4.1_018106m|PACid:17965574 | 938 | 0.0 |
| FGENESH CDS | blastn | scaffold03614_FGENESH122 3 exon (s) 992757 - 994221 552 bp, chain - | 573 | 1e-163 |
| Arabidopsis thaliana | blastx | - | - | - |
| Populus trichocarpa | blastx | POPTR_0003s08640.1|PACid:18217411 | 206 | 1e-53 |
| Vitis vinifera | blastx | GSVIVT01024369001|PACid:17832585 | 135 | 1e-32 |
| Ricinus communis | blastx | 30073.m002283|PACid:16816866 | 255 | 1e-68 |
| InterProScan |
| GO:0006952
Biological Process defense response |
| GO:0009607
Biological Process response to biotic stimulus |
| Sequence: Contig11277_3_ORF1 Length: 164 aa | ||||||||||
| InterPro IPR000916 Family |
| |||||||||
| noIPR unintegrated |
| |||||||||
![[36-129]T 8e-20 PD000531 Q7F9M1_EEEEE_Q7F9M1;](http://pmix.psc.riken.jp/img/interpro/D.gif){kind=small}
![[6-160]T 9.7e-07 PF00407 Bet_v_I](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[12-163]T 4.2e-14 G3DSA:3.30.530.20 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[7-159]T 1.8e-30 SSF55961 Bet v1-like](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
| Sequence: Contig11277_5_ORF2 Length: 90 aa | |||||||
| noIPR unintegrated |
| ||||||
![[78-89]? NA seg seg](http://pmix.psc.riken.jp/img/interpro/G.gif){kind=small}
| Sequence: Contig11277_6_ORF2 Length: 106 aa | |
| No hits reported. | |
