Home > Keyword search > Contig11179

Summary
Sequence ID 
Sequence Length 773 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_013098 (Contig11179)
 
 
Sequence
>Contig11179
GGAACTCACCAATTCCATCTATAAACTCTCTAGTCTAGCTTCGTTTGCTATTTCTTTTCAAGGCCATCATGGGTGTTGTG
ACTATTGAGAGGGAAATTATTAGTTCAATCCCTGCAGCCAAGATGTTCAAGGTCTTTGTCCTTGAAGCCGACACTGCTCT
TCCTAGTATTCTGTCTGAAGCTATTAAGAGCGTAGAGTTCATTCAAGGCAATGGAGGGCCTGGAACCATTAAGAAGACTA
CATTTGTAGAAGGTGGGGATTTCAAATATATAAAAACCAAGATTGAGACCATAGACAAAGATAACTTGACACAAAGCTAC
ACAGTTATTGAAGGTGATCCATGGTCAGATTTGCTAGAAAAAATTACATATGAGAACAAAATGGTGGCTACTCCTGATGG
AGGATGCATTATCAAAAGCACCAACAAGTTCTTCCCAAAGGGAAATAGTGAACTTGATGAAGAGAAAGTGAAGGCTGGAG
CAGAGAAGACCTGGCTAATCTTTAAGGCTGTTGAAGCCTATCTCGCTGCAAATCCTGATGCCTATAACTAAATATCGTCA
GAAGCTGAACTAGCTATCTTGCTTTTGTTATTGTTTCCTTCGTTTCTCTTTGTTTTTGGGTGAAACTGTGAAAAAGCCAG
ACTACTTTTGGCCTTACAATAAAAGTATGTATTTGTAATTAAGTTTGAAAAAGATTGCTTGTAATTTCCAGTGTCATAAT
TATAAACATGTACTACTGTCTTTATTTATTAAACTGTTATTTTCTTTATTAAA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002516999.1| Major allergen Pru av, putative [Ricinus communis] gb|EEF45613.1| Major allergen Pru av, putative [Ricinus communis] 209 5e-52
  Manihot esculenta blastn  cassava4.1_018015m|PACid:17961848 950 0.0
  FGENESH CDS blastn  scaffold01551_FGENESH458 2 exon (s) 3015918 - 3016504 483 bp, chain + 950 0.0
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx  POPTR_0011s00430.1|PACid:18231863 177 1e-44
  Vitis vinifera blastx  GSVIVT01035071001|PACid:17840333 192 2e-49
  Ricinus communis blastx  29726.m004122|PACid:16806832 209 1e-54
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
detail
Sequence: Contig11179_3_ORF2  Length: 170 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[22-161]T 1e-41 PD000531 Q93YH9_CASSA_Q93YH9;Q93YH9_CASSA_Q93YH9;
PR00634[13-33]T 6.9e-37 PR00634 BETALLERGEN[36-46]T 6.9e-37 PR00634 BETALLERGEN[60-69]T 6.9e-37 PR00634 BETALLERGEN[76-95]T 6.9e-37 PR00634 BETALLERGEN[95-108]T 6.9e-37 PR00634 BETALLERGEN[120-136]T 6.9e-37 PR00634 BETALLERGEN[154-164]T 6.9e-37 PR00634 BETALLERGENBETALLERGEN
PF00407[11-165]T 6.2e-37 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[12-168]T 7e-52 G3DSA:3.30.530.20 no descriptionno description
SSF55961[12-170]T 4.3e-50 SSF55961 Bet v1-likeBet v1-like
Sequence: Contig11179_5_ORF2  Length: 65 aa
noIPR
unintegrated
unintegrated
seg[52-65]? NA seg segseg
Sequence: Contig11179_5_ORF3  Length: 66 aa
noIPR
unintegrated
unintegrated
seg[11-27]? NA seg segseg
Sequence: Contig11179_5_ORF4  Length: 55 aa
No hits reported.
Sequence: Contig11179_6_ORF2  Length: 79 aa
No hits reported.