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Summary
Sequence ID 
Sequence Length 1080 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012871 (Contig10777)
 
 
Sequence
>Contig10777
GTATCCGAGTGCTGTTGACCATTTTAAGAAGCAATTTGCTTACCTTGAGGAACACTATGGAAACGGTGCAACTGTTGCTC
CACCTGAGAGGCAGCATGCATCCTTGCCCAGGCCCTGTGTGTTATATTCAGATAATACAGTACAGAACTCAGTGGAAGTC
ACAAATGATCTTTCCAAGTGTTCCATCAAAGATATTGAGAAGCCACACGTGGACCGAAGTGGTGGGATCCCAATGACAAG
GCTTCCCCTTCAAGTTCCTGAAAGTATTCAAGGTGCTGCAAGGCCTGGGAAAGTTATTGGTTCAGTAATGCGTTATAACA
ATTGTGGAGTGGCTGCAAAAGCAGAAGCTCTTGAACAGCGAAGGATGGTCAGGAATCCAGCTATTTCAACTCAATATGCT
GCAGCAAACTGTTCATATCCAAGAAGAAATCCAGTGTGTAAAAATGAAAGGGGAGAAGATGATGGGGTTGAAGGCTCCAC
TGGGTTGCAGCCGAAGCCTCAATACACAGCAAGGAAAGTAGCTGCAGCTCAAGGTGGAACTGGGAATCACTGGTATTGAT
GTTAATGTGGCAAACTTGAATGCTCTGACTGCCTATAACGAGCGTAATAGTGACAGTCATTGAAGCAAATTCAATTGGAC
CCATCATGCTGCCAAAGTGAATTCATATGTTTCTAATGCTGTAATTTAGTGGTTTTTTCAACCAGTTCAATTGCATGAGA
AGATTTGAGGGATGGACTTCTGTTGGAGGACGTTAGGCAGCAAAATGTAATTGATATCACTAATTTTCAGTTGAACGGGT
CCTTTGGTGCTTACCATTCATGACCATATAGCTCTCTGATTTAGCTCAATAAGCCGGAGGGGGATGTATGATAACGTGAA
TGAGCAAAGACAAAGGGATGGATTGACATGCCTAGTTAAAATATTCTTTTCAGTTTTCGAAGTTAGAAGTAAGCAACTTC
TTTATTGTCCCCTCACTCGGGGCCAAAGCTCAATTGTTGATTGTTGTATCATTCTGCTTTGTTATTTTATACCTGACATA
ATGATCTTCTTCATTATGAACAAGTAGCTGCATACATAGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002516796.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF45410.1| big map kinase/bmk, putative [Ricinus communis] 342 5e-92
  Manihot esculenta blastn  cassava4.1_004681m|PACid:17961744 1092 0.0
  FGENESH CDS blastn  scaffold01551_FGENESH315 10 exon (s) 2063433 - 2067791 1755 bp, chain + 1092 0.0
  Arabidopsis thaliana blastx  AT5G19010.1 | Symbols: MPK16 | mitogen-activated protein kinase 16 | chr5:6345096-6347676 REVERSE LENGTH=567 209 3e-54
  Populus trichocarpa blastx  POPTR_0010s03070.2|PACid:18240293 337 7e-93
  Vitis vinifera blastx  GSVIVT01017873001|PACid:17827971 319 2e-87
  Ricinus communis blastx  29726.m003916|PACid:16806629 342 1e-94
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig10777_2_ORF1  Length: 185 aa
No hits reported.
Sequence: Contig10777_3_ORF1  Length: 77 aa
noIPR
unintegrated
unintegrated
seg[4-18]? NA seg segseg
Sequence: Contig10777_3_ORF2  Length: 70 aa
No hits reported.
Sequence: Contig10777_3_ORF3  Length: 75 aa
No hits reported.
Sequence: Contig10777_4_ORF2  Length: 64 aa
No hits reported.
Sequence: Contig10777_5_ORF2  Length: 59 aa
No hits reported.
Sequence: Contig10777_5_ORF3  Length: 50 aa
No hits reported.
Sequence: Contig10777_6_ORF2  Length: 93 aa
noIPR
unintegrated
unintegrated
seg[44-52]? NA seg segseg