Sequence ID | ||
Sequence Length | 804 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | - | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Corresponding scaffold | - | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_012844 (Contig10729) |
>Contig10729 GGAATTGCCTCAAGAATTGAGAATTCACAAAGGTGCCTTCATCCCCTTCTCCCTCTCTCTCTCCCAGCCATAAAATTAAT ACAAGCCCAGATCCACTAGGATCTGATCATGGACCCCTCCGGCTTTCCCACCGGCGGGAATCCACCTCCACCGCCAGGAC GGTCAAGGCCACCGCAGCCACCACATCTGCAACCGTCAAGTTCACCATCACCATCACCACCAAAAAAACAGATCCAAATC CAAGGCCCTCGTCCTACGGCACTTAAAGTCCATCAAGCCTCTCACAAAATCAAGAAACCACCACTTCCTCCACAGCAGCA GCCGGTGATCATCTATGCAGTCTCCCCAAAAATCATCCACACCGAGGTTTCAGACTTCATGGCTGTGGTCCAGCGCCTAA CGGGACTCTCCTCTGGAGACTTCTCAGGCGACGGAGAAGTATCACCAGAAGCAAGATTAGCTGCAACCGAGAAGGCAAGT CCAAGGGATAGAAGCAGTGCTAGCATTGAAGAAGGAGATAATCTCATGGGCATGTTAGAGGGAGTGGAGATAAGTCAGAT TCCGGGGATCCTATCACCAGCACCAGGGATGTTACCTCCGGTGCCATCTGGGTTTTTCTCGCCGGTAACAGACCCAAAAT TCTTTTATGATATAAACAGTCCATTTGGAAGCAGTAGTTTTGTGGCGAGTCCTTCAACTTTGTTATCAGCTCCTATATTT TCTCCATTACCTTCACCAGATATCTTCAACCTGCTCATGGATTTTGAGGAGGAGAAGAGGGGGGAGGGGGTGGAGGAGGT GGAG |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ef|XP_002517232.1| Protein MKS1, putative [Ricinus communis] >g... 277 2e-72 >ref|XP_002517232.1| Protein MKS1, putative [Ricinus communis] gb|EEF45132.1| Protein MKS1, putative [Ricinus communis] | 277 | 2e-72 |
Manihot esculenta | blastn | cassava4.1_015269m|PACid:17973642 | 1380 | 0.0 |
FGENESH CDS | blastn | scaffold06948_FGENESH34 2 exon (s) 372454 - 372752 264 bp, chain - | 488 | 1e-137 |
Arabidopsis thaliana | blastx | AT3G18690.1 | Symbols: MKS1 | MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222 | 140 | 1e-33 |
Populus trichocarpa | blastx | POPTR_0005s05910.1|PACid:18207583 | 238 | 4e-63 |
Vitis vinifera | blastx | GSVIVT01001661001|PACid:17817726 | 141 | 4e-34 |
Ricinus communis | blastx | 30136.m001021|PACid:16819149 | 277 | 5e-75 |
InterProScan |
No hits found |
Sequence: Contig10729_1_ORF2 Length: 235 aa | |||||||
InterPro IPR008889 Domain |
| ||||||
noIPR unintegrated |
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Sequence: Contig10729_2_ORF2 Length: 73 aa | |||||||
noIPR unintegrated |
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Sequence: Contig10729_2_ORF3 Length: 49 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig10729_3_ORF2 Length: 81 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig10729_3_ORF3 Length: 74 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig10729_4_ORF2 Length: 51 aa | |
No hits reported. |
Sequence: Contig10729_5_ORF2 Length: 62 aa | |
No hits reported. |
Sequence: Contig10729_6_ORF1 Length: 52 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig10729_6_ORF2 Length: 73 aa | |||||||
noIPR unintegrated |
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Sequence: Contig10729_6_ORF3 Length: 58 aa | |||||||
noIPR unintegrated |
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