Home > Keyword search > Contig10729

Summary
Sequence ID 
Sequence Length 804 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012844 (Contig10729)
 
 
Sequence
>Contig10729
GGAATTGCCTCAAGAATTGAGAATTCACAAAGGTGCCTTCATCCCCTTCTCCCTCTCTCTCTCCCAGCCATAAAATTAAT
ACAAGCCCAGATCCACTAGGATCTGATCATGGACCCCTCCGGCTTTCCCACCGGCGGGAATCCACCTCCACCGCCAGGAC
GGTCAAGGCCACCGCAGCCACCACATCTGCAACCGTCAAGTTCACCATCACCATCACCACCAAAAAAACAGATCCAAATC
CAAGGCCCTCGTCCTACGGCACTTAAAGTCCATCAAGCCTCTCACAAAATCAAGAAACCACCACTTCCTCCACAGCAGCA
GCCGGTGATCATCTATGCAGTCTCCCCAAAAATCATCCACACCGAGGTTTCAGACTTCATGGCTGTGGTCCAGCGCCTAA
CGGGACTCTCCTCTGGAGACTTCTCAGGCGACGGAGAAGTATCACCAGAAGCAAGATTAGCTGCAACCGAGAAGGCAAGT
CCAAGGGATAGAAGCAGTGCTAGCATTGAAGAAGGAGATAATCTCATGGGCATGTTAGAGGGAGTGGAGATAAGTCAGAT
TCCGGGGATCCTATCACCAGCACCAGGGATGTTACCTCCGGTGCCATCTGGGTTTTTCTCGCCGGTAACAGACCCAAAAT
TCTTTTATGATATAAACAGTCCATTTGGAAGCAGTAGTTTTGTGGCGAGTCCTTCAACTTTGTTATCAGCTCCTATATTT
TCTCCATTACCTTCACCAGATATCTTCAACCTGCTCATGGATTTTGAGGAGGAGAAGAGGGGGGAGGGGGTGGAGGAGGT
GGAG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002517232.1| Protein MKS1, putative [Ricinus communis] >g... 277 2e-72 >ref|XP_002517232.1| Protein MKS1, putative [Ricinus communis] gb|EEF45132.1| Protein MKS1, putative [Ricinus communis] 277 2e-72
  Manihot esculenta blastn  cassava4.1_015269m|PACid:17973642 1380 0.0
  FGENESH CDS blastn  scaffold06948_FGENESH34 2 exon (s) 372454 - 372752 264 bp, chain - 488 1e-137
  Arabidopsis thaliana blastx  AT3G18690.1 | Symbols: MKS1 | MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222 140 1e-33
  Populus trichocarpa blastx  POPTR_0005s05910.1|PACid:18207583 238 4e-63
  Vitis vinifera blastx  GSVIVT01001661001|PACid:17817726 141 4e-34
  Ricinus communis blastx  30136.m001021|PACid:16819149 277 5e-75
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig10729_1_ORF2  Length: 235 aa
InterPro
IPR008889
Domain
VQ
PF05678[79-109]T 3.7e-11 PF05678 VQVQ
noIPR
unintegrated
unintegrated
seg[6-52]? NA seg seg[63-78]? NA seg seg[223-235]? NA seg segseg
Sequence: Contig10729_2_ORF2  Length: 73 aa
noIPR
unintegrated
unintegrated
seg[33-38]? NA seg segseg
Sequence: Contig10729_2_ORF3  Length: 49 aa
noIPR
unintegrated
unintegrated
seg[13-28]? NA seg seg[38-49]? NA seg segseg
Sequence: Contig10729_3_ORF2  Length: 81 aa
noIPR
unintegrated
unintegrated
seg[6-16]? NA seg seg[42-70]? NA seg segseg
Sequence: Contig10729_3_ORF3  Length: 74 aa
noIPR
unintegrated
unintegrated
seg[48-57]? NA seg segseg
Sequence: Contig10729_4_ORF2  Length: 51 aa
No hits reported.
Sequence: Contig10729_5_ORF2  Length: 62 aa
No hits reported.
Sequence: Contig10729_6_ORF1  Length: 52 aa
noIPR
unintegrated
unintegrated
seg[1-22]? NA seg segseg
Sequence: Contig10729_6_ORF2  Length: 73 aa
noIPR
unintegrated
unintegrated
seg[12-32]? NA seg seg[40-51]? NA seg segseg
Sequence: Contig10729_6_ORF3  Length: 58 aa
noIPR
unintegrated
unintegrated
seg[15-53]? NA seg segseg