Home > Keyword search > Contig10398

Summary
Sequence ID 
Sequence Length 740 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012643 (Contig10398)
 
 
Sequence
>Contig10398
GAGGCATTAGCAGATCCATATTTTCATGATCTGGCAAATAAAGAGCATGAACCATCAAGACAACCTATTTCAAAGCTTGA
GTTTGAATTTGAGAGGAGGAAGTTGACAGAAGATGACGTAAGAGAGTTAATCTATAGAGAGATTTTGGAGTACCATCCTG
AGATGCTGAAAGAGTACCTCCGGGGAACAGATCATACTCACTTCGTGTATCCAAGTGGAATTGACCGATTTAAGGAACAA
TTTGCACATCTTGAGGAAGGAAATGGTAGAAGTGAAAGAAGCAGTCCTTTGCATAGGAAGCATGCCACCCCCTTGCCTAG
GGAGCGGATCTGCACAATCGATGATGAAACTGATATTGTCATAAAGCGTAGTGCAGCATCTTTTACTCGTGCAACTATTC
AGAGTCCTCCAAAGTCAGAAACGACTGAAGATCTGCAATCAACTGAAGATCTGCAATCGGCAAACAGAAATGCAGTAGCT
ATGCAGACCAGCTCTACCAAGCCGAAGTGTGGCGCCCGTAGCCTGTTGAGGAGCGACAGTATCTGTGCTTCAAGGTGCAT
TGGCATGGTTGGAAATGATCGCGAAGTACATGCTCTCTGATTTTTACGTGCACACCATGGAGCGCCCCACAGAAGGGACG
TTTACATTTAAAATATATATTTATTCAGCTAGCATACTGCTGAGATAAAGATAGGTACACTCTGCTATTCTCTTTCATGC
TAGCTGCTACTGTCTTTCGA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002526023.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF36363.1| big map kinase/bmk, putative [Ricinus communis] 340 9e-92
  Manihot esculenta blastn  cassava4.1_006140m|PACid:17972634 1181 0.0
  FGENESH CDS blastn  scaffold00318_FGENESH46 9 exon (s) 373095 - 378216 1497 bp, chain - 1181 0.0
  Arabidopsis thaliana blastx  AT2G01450.4 | Symbols: ATMPK17, MPK17 | MAP kinase 17 | chr2:199722-202010 REVERSE LENGTH=486 192 2e-49
  Populus trichocarpa blastx  POPTR_0008s12890.1|PACid:18247511 316 1e-86
  Vitis vinifera blastx  GSVIVT01008408001|PACid:17821014 211 3e-55
  Ricinus communis blastx  29816.m000682|PACid:16809594 340 3e-94
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig10398_1_ORF1  Length: 199 aa
No hits reported.
Sequence: Contig10398_2_ORF2  Length: 64 aa
noIPR
unintegrated
unintegrated
coil[18-39]? NA coil coiled-coilcoiled-coil
Sequence: Contig10398_2_ORF3  Length: 52 aa
No hits reported.
Sequence: Contig10398_4_ORF2  Length: 95 aa
No hits reported.
Sequence: Contig10398_5_ORF2  Length: 56 aa
No hits reported.
Sequence: Contig10398_5_ORF3  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[30-51]? NA seg segseg
Sequence: Contig10398_6_ORF2  Length: 80 aa
noIPR
unintegrated
unintegrated
seg[62-76]? NA seg segseg
Sequence: Contig10398_6_ORF3  Length: 66 aa
noIPR
unintegrated
unintegrated
seg[15-22]? NA seg seg[39-49]? NA seg segseg