Home > Keyword search > Contig10345

Summary
Sequence ID 
Sequence Length 1449 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012611 (Contig10345)
 
 
Sequence
>Contig10345
AGCGGATCGTTGGACCCATGCATGAATTGGCAGCAAAGGTTGATGAATATGCTCGTGGTATGATCAGTGGTTCTGGATCA
ACGCTCTTTGAAGAGCTTGGATTATATTATATTGGTCCTGTTGATGGCCACAATATAGATGATCTTATATCTATTCTCAA
AGAGGTTAAGAGTACTAAAACTACAGGTCCAGTCTTGATACATGTCGTCACGGAGAAAGGTCGGGGATATCCATATGCTG
AGCAAGCTGCTGACAAGTACCATGGTATTTGGAATCGACAACATCATAGAAAAAAAATGCATGCAAGATTTTGAGTAACT
ATATTGTGGTTATGTTTATTTGGAAAAACTAATATTGGCTAACCACTAGTGCCTTGGAGAAATTCTTTCTTGGATTTATA
GAAATTGTATCTGAACTTTATTATTAGAAAGAAGCAACTGAATGGTTTTCATTTTGCAGGGGTGACCAAGTTTGATCCTG
CAACAGGAAAGCAATTCAAGGCAAGTGCTAGTACACAGTCCTATACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCA
GAAGCAGACAAGGATATTGTTGCAATTCATGCTGCAATGGGAGGTGGAACTGGCTTAAACCTCTTCCTTCGTCGTTTCCC
AACACGATGCTTTGATGTTGGAATAGCAGAACAGCATGCAGTTACATTTGCTGCAGGATTAGCCTGTGAAGGCCTTAAAC
CATTTTGTGCAATCTACTCATCTTTCATGCAGAGGGCTTACGACCAGGTAGTACACGATGTGGATTTGCAGAAACTGCCG
GTGAGATTTGCAATGGACAGAGCTGGGCTGGTTGGAGCAGATGGTCCCACACATTGTGGAGCATTTGATGTCACTTTTAT
GGCATGCCTCCCTAACATGGTGGTGATGGCTCCTTCTGATGAGGCAGAACTTTTTCACATGGTTGCCACTGCAGCTGCCA
TAGATGATCGTCCTAGCTGTTTCCGATATCCAAGGGGTAATGGTGTTGGCGTTCAGCTTCCCTCAGGAAACAAAGGCATT
CCTCTTGAGGTTGGTAAAGGCAGGATATTGATAGAAGGGGAAAGAGTGGCACTCTTGGGTTATGGTACAGCAGTTCAGAG
CTGTTTGGCTGCTGCCTCTTTAGTGGAACCCCATGGACTTCGTATAACAGTAGCAGATGCTAGATTCTGTAAACCTTTGG
ATCATGCCCTCATTCGAAGCCTAGCAAAATCACATGAAATTTTGATAACAGTTGAAGAAGGATCAATTGGGGGCTTTGGA
TCTCATGTTGCCCATTTTCTGGCCCTTGATGGTCTACTTGATGGCAAGCTGAAGTGGCGACCGCTCGTTCTTCCCGATAG
GTACATCGACCATGGATCCCCGGCTGANNAGTTGGTACAGGCTGGTCTAACACCATCTCACATTGCAGCAACAGTATTCA
ACATACTTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  dbj|BAF98288.1| 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis] 642 0.0
  Manihot esculenta blastn  cassava4.1_002536m|PACid:17962167 1913 0.0
  FGENESH CDS blastn  scaffold01551_FGENESH347 10 exon (s) 2215903 - 2219964 2184 bp, chain + 1820 0.0
  Arabidopsis thaliana blastx  AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717 594 1e-170
  Populus trichocarpa blastx  POPTR_0010s01910.5|PACid:18241514 633 0.0
  Vitis vinifera blastx  GSVIVT01017832001|PACid:17827935 619 1e-178
  Ricinus communis blastx  29726.m003963|PACid:16806676 639 0.0
 
 
Gene Ontology 
InterProScan
GO:0003824
Molecular Function
catalytic activity
GO:0008152
Biological Process
metabolic process
 
 
InterProScan result 
Sequence: Contig10345_3_ORF1  Length: 103 aa
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[14-103]T 1.9e-07 G3DSA:3.40.50.970 no descriptionno description
SSF52518[28-102]T 1.7e-13 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig10345_3_ORF2  Length: 349 aa
InterPro
IPR005475
Domain
Transketolase, central region
PF02779[37-204]T 1.7e-67 PF02779 Transket_pyrTransket_pyr
PS00802[145-161]T 8e-5 PS00802 TRANSKETOLASE_2TRANSKETOLASE_2
InterPro
IPR005476
Domain
Transketolase, C-terminal
PF02780[218-341]T 1.1e-39 PF02780 Transketolase_CTransketolase_C
InterPro
IPR009014
Domain
Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
SSF52922[212-349]T 1e-37 SSF52922 TK C-terminal domain-likeTK C-terminal domain-like
InterPro
IPR015941
Domain
Transketolase C-terminal-like
G3DSA:3.40.50.920[217-349]T 2.7e-25 G3DSA:3.40.50.920 no descriptionno description
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[30-200]T 3.5e-51 G3DSA:3.40.50.970 no descriptionno description
PTHR11624[67-349]T 3.3e-147 PTHR11624 DEHYDROGENASE RELATEDDEHYDROGENASE RELATED
PTHR11624:SF20[67-349]T 3.3e-147 PTHR11624:SF20 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE
seg[302-311]? NA seg segseg
SSF52518[35-228]T 9.1e-64 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig10345_4_ORF2  Length: 75 aa
noIPR
unintegrated
unintegrated
seg[53-65]? NA seg segseg
Sequence: Contig10345_4_ORF3  Length: 68 aa
No hits reported.
Sequence: Contig10345_4_ORF4  Length: 57 aa
noIPR
unintegrated
unintegrated
seg[33-52]? NA seg segseg
Sequence: Contig10345_5_ORF2  Length: 58 aa
No hits reported.
Sequence: Contig10345_5_ORF3  Length: 58 aa
No hits reported.
Sequence: Contig10345_6_ORF2  Length: 94 aa
No hits reported.
Sequence: Contig10345_6_ORF3  Length: 72 aa
noIPR
unintegrated
unintegrated
seg[33-45]? NA seg segseg
Sequence: Contig10345_6_ORF4  Length: 75 aa
noIPR
unintegrated
unintegrated
seg[24-31]? NA seg segseg