Sequence ID | ||
Sequence Length | 1449 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | Mapped | |
Corresponding scaffold | - | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_012611 (Contig10345) |
>Contig10345 AGCGGATCGTTGGACCCATGCATGAATTGGCAGCAAAGGTTGATGAATATGCTCGTGGTATGATCAGTGGTTCTGGATCA ACGCTCTTTGAAGAGCTTGGATTATATTATATTGGTCCTGTTGATGGCCACAATATAGATGATCTTATATCTATTCTCAA AGAGGTTAAGAGTACTAAAACTACAGGTCCAGTCTTGATACATGTCGTCACGGAGAAAGGTCGGGGATATCCATATGCTG AGCAAGCTGCTGACAAGTACCATGGTATTTGGAATCGACAACATCATAGAAAAAAAATGCATGCAAGATTTTGAGTAACT ATATTGTGGTTATGTTTATTTGGAAAAACTAATATTGGCTAACCACTAGTGCCTTGGAGAAATTCTTTCTTGGATTTATA GAAATTGTATCTGAACTTTATTATTAGAAAGAAGCAACTGAATGGTTTTCATTTTGCAGGGGTGACCAAGTTTGATCCTG CAACAGGAAAGCAATTCAAGGCAAGTGCTAGTACACAGTCCTATACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCA GAAGCAGACAAGGATATTGTTGCAATTCATGCTGCAATGGGAGGTGGAACTGGCTTAAACCTCTTCCTTCGTCGTTTCCC AACACGATGCTTTGATGTTGGAATAGCAGAACAGCATGCAGTTACATTTGCTGCAGGATTAGCCTGTGAAGGCCTTAAAC CATTTTGTGCAATCTACTCATCTTTCATGCAGAGGGCTTACGACCAGGTAGTACACGATGTGGATTTGCAGAAACTGCCG GTGAGATTTGCAATGGACAGAGCTGGGCTGGTTGGAGCAGATGGTCCCACACATTGTGGAGCATTTGATGTCACTTTTAT GGCATGCCTCCCTAACATGGTGGTGATGGCTCCTTCTGATGAGGCAGAACTTTTTCACATGGTTGCCACTGCAGCTGCCA TAGATGATCGTCCTAGCTGTTTCCGATATCCAAGGGGTAATGGTGTTGGCGTTCAGCTTCCCTCAGGAAACAAAGGCATT CCTCTTGAGGTTGGTAAAGGCAGGATATTGATAGAAGGGGAAAGAGTGGCACTCTTGGGTTATGGTACAGCAGTTCAGAG CTGTTTGGCTGCTGCCTCTTTAGTGGAACCCCATGGACTTCGTATAACAGTAGCAGATGCTAGATTCTGTAAACCTTTGG ATCATGCCCTCATTCGAAGCCTAGCAAAATCACATGAAATTTTGATAACAGTTGAAGAAGGATCAATTGGGGGCTTTGGA TCTCATGTTGCCCATTTTCTGGCCCTTGATGGTCTACTTGATGGCAAGCTGAAGTGGCGACCGCTCGTTCTTCCCGATAG GTACATCGACCATGGATCCCCGGCTGANNAGTTGGTACAGGCTGGTCTAACACCATCTCACATTGCAGCAACAGTATTCA ACATACTTG |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | dbj|BAF98288.1| 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis] | 642 | 0.0 |
Manihot esculenta | blastn | cassava4.1_002536m|PACid:17962167 | 1913 | 0.0 |
FGENESH CDS | blastn | scaffold01551_FGENESH347 10 exon (s) 2215903 - 2219964 2184 bp, chain + | 1820 | 0.0 |
Arabidopsis thaliana | blastx | AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717 | 594 | 1e-170 |
Populus trichocarpa | blastx | POPTR_0010s01910.5|PACid:18241514 | 633 | 0.0 |
Vitis vinifera | blastx | GSVIVT01017832001|PACid:17827935 | 619 | 1e-178 |
Ricinus communis | blastx | 29726.m003963|PACid:16806676 | 639 | 0.0 |
InterProScan |
GO:0003824
Molecular Function catalytic activity |
GO:0008152
Biological Process metabolic process |
Sequence: Contig10345_3_ORF1 Length: 103 aa | ||||||||||
noIPR unintegrated |
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Sequence: Contig10345_3_ORF2 Length: 349 aa | |||||||||||||||||||
InterPro IPR005475 Domain |
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InterPro IPR005476 Domain |
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InterPro IPR009014 Domain |
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InterPro IPR015941 Domain |
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noIPR unintegrated |
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Sequence: Contig10345_4_ORF2 Length: 75 aa | |||||||
noIPR unintegrated |
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Sequence: Contig10345_4_ORF3 Length: 68 aa | |
No hits reported. |
Sequence: Contig10345_4_ORF4 Length: 57 aa | |||||||
noIPR unintegrated |
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Sequence: Contig10345_5_ORF2 Length: 58 aa | |
No hits reported. |
Sequence: Contig10345_5_ORF3 Length: 58 aa | |
No hits reported. |
Sequence: Contig10345_6_ORF2 Length: 94 aa | |
No hits reported. |
Sequence: Contig10345_6_ORF3 Length: 72 aa | |||||||
noIPR unintegrated |
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Sequence: Contig10345_6_ORF4 Length: 75 aa | |||||||
noIPR unintegrated |
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