Home > Keyword search > Contig10007

Summary
Sequence ID 
Sequence Length 796 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012376 (Contig10007)
 
 
Sequence
>Contig10007
CCTTCTCCTCCTTTTCCATTTTACCATGGCCATTTGGTTCACGAGATCAAGAAGCATCGCCTACTATTTAAAGAGAAAGA
TGAGTTTCATGGGAATTCTCAACCAACACTCTTGCACTAATCCTTATTTCGAATCTATTTGCTCTTCTTCATCATCATCG
TCCAGAATCACAGATGCTGAGAATTCTTCAATTTCGTGCCACTCATCTGCCTTCCCTTTCTCGGTGCACCGGTTTGAATC
TACCAAAGCCGCTGGCCAACTCGATCAGTTGTACTCCAGCGATGATGAAAGCAGTCAGGGCTTGGATTTTCCAGGAGGGA
AAGTTGCGTATATTTCTGAAATGAGATTCATTTCTGAATCCAATCAGAAGAGAATACCATGTTACCGACTTCTCAATGAC
AATGGAGAGCTAATCAACGGCAGCGATTTTCACCAGGTAAGCGAGGAACTTGCAGTGAAAATGTACAGCAAAATGGTCAC
CCTTCAGCAGATGGATACCATATTCTATGAAGCACAGAGGCAAGGAAGAATTTCTTTCTATCTCACTTCTGTCGGTGAAG
AAGCAGCAAACATAGCATCAGCAGCTGCACTTGGTGCAGACGATGTTGTCCTGCCTCAGTATCGGGAGCCTGGAGTTTTA
TTATGGCGTGGTTTTACACTTCAAGAATTTGCCAACCAGTGCTTTGGAAACAAAGCTGATTATGGGAAAGGCAGGCAAAT
GCCAATCCATTATGGTTCTAAAAAGCTTAATTACTTCACTGTTTCTTCACCTATAGCTACTCAACTTCCTCAAGCT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002890441.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] gb|EFH66700.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] 310 1e-82
  Manihot esculenta blastn  cassava4.1_006481m|PACid:17969409 1473 0.0
  FGENESH CDS blastn  scaffold03699_FGENESH10 9 exon (s) 66558 - 69922 1458 bp, chain - 1473 0.0
  Arabidopsis thaliana blastx  AT1G21400.1 | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:7493492-7496240 FORWARD LENGTH=472 301 3e-82
  Populus trichocarpa blastx  POPTR_0005s20770.1|PACid:18208258 341 3e-94
  Vitis vinifera blastx  GSVIVT01026470001|PACid:17834167 291 2e-79
  Ricinus communis blastx  29648.m001932|PACid:16804774 265 2e-71
 
 
Gene Ontology 
InterProScan
GO:0008152
Biological Process
metabolic process
 
 
InterProScan result 
Sequence: Contig10007_2_ORF1  Length: 265 aa
InterPro
IPR001017
Domain
Dehydrogenase, E1 component
PF00676[155-265]T 7.8e-30 PF00676 E1_dhE1_dh
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[95-265]T 7.7e-44 G3DSA:3.40.50.970 no descriptionno description
PTHR11516[130-265]T 2.5e-76 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)
PTHR11516:SF1[130-265]T 2.5e-76 PTHR11516:SF1 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT-RELATED2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT-RELATED
seg[48-54]? NA seg seg[188-199]? NA seg segseg
SSF52518[121-265]T 4e-30 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig10007_3_ORF2  Length: 86 aa
No hits reported.
Sequence: Contig10007_3_ORF3  Length: 66 aa
No hits reported.
Sequence: Contig10007_5_ORF2  Length: 55 aa
No hits reported.
Sequence: Contig10007_5_ORF3  Length: 68 aa
No hits reported.