Sequence ID | ||
Sequence Length | 796 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | Mapped | |
Corresponding scaffold | - | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_012376 (Contig10007) |
>Contig10007 CCTTCTCCTCCTTTTCCATTTTACCATGGCCATTTGGTTCACGAGATCAAGAAGCATCGCCTACTATTTAAAGAGAAAGA TGAGTTTCATGGGAATTCTCAACCAACACTCTTGCACTAATCCTTATTTCGAATCTATTTGCTCTTCTTCATCATCATCG TCCAGAATCACAGATGCTGAGAATTCTTCAATTTCGTGCCACTCATCTGCCTTCCCTTTCTCGGTGCACCGGTTTGAATC TACCAAAGCCGCTGGCCAACTCGATCAGTTGTACTCCAGCGATGATGAAAGCAGTCAGGGCTTGGATTTTCCAGGAGGGA AAGTTGCGTATATTTCTGAAATGAGATTCATTTCTGAATCCAATCAGAAGAGAATACCATGTTACCGACTTCTCAATGAC AATGGAGAGCTAATCAACGGCAGCGATTTTCACCAGGTAAGCGAGGAACTTGCAGTGAAAATGTACAGCAAAATGGTCAC CCTTCAGCAGATGGATACCATATTCTATGAAGCACAGAGGCAAGGAAGAATTTCTTTCTATCTCACTTCTGTCGGTGAAG AAGCAGCAAACATAGCATCAGCAGCTGCACTTGGTGCAGACGATGTTGTCCTGCCTCAGTATCGGGAGCCTGGAGTTTTA TTATGGCGTGGTTTTACACTTCAAGAATTTGCCAACCAGTGCTTTGGAAACAAAGCTGATTATGGGAAAGGCAGGCAAAT GCCAATCCATTATGGTTCTAAAAAGCTTAATTACTTCACTGTTTCTTCACCTATAGCTACTCAACTTCCTCAAGCT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002890441.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] gb|EFH66700.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] | 310 | 1e-82 |
Manihot esculenta | blastn | cassava4.1_006481m|PACid:17969409 | 1473 | 0.0 |
FGENESH CDS | blastn | scaffold03699_FGENESH10 9 exon (s) 66558 - 69922 1458 bp, chain - | 1473 | 0.0 |
Arabidopsis thaliana | blastx | AT1G21400.1 | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:7493492-7496240 FORWARD LENGTH=472 | 301 | 3e-82 |
Populus trichocarpa | blastx | POPTR_0005s20770.1|PACid:18208258 | 341 | 3e-94 |
Vitis vinifera | blastx | GSVIVT01026470001|PACid:17834167 | 291 | 2e-79 |
Ricinus communis | blastx | 29648.m001932|PACid:16804774 | 265 | 2e-71 |
InterProScan |
GO:0008152
Biological Process metabolic process |
Sequence: Contig10007_2_ORF1 Length: 265 aa | |||||||||||||||||||
InterPro IPR001017 Domain |
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noIPR unintegrated |
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Sequence: Contig10007_3_ORF2 Length: 86 aa | |
No hits reported. |
Sequence: Contig10007_3_ORF3 Length: 66 aa | |
No hits reported. |
Sequence: Contig10007_5_ORF2 Length: 55 aa | |
No hits reported. |
Sequence: Contig10007_5_ORF3 Length: 68 aa | |
No hits reported. |