Home > Keyword search > Contig09881

Summary
Sequence ID 
Sequence Length 682 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold07225
Probe ID of RIKEN ver.1 microarray  -
 
 
Sequence
>Contig09881
TTGCGTGAGGTTAAAATCATGAAGCGTTTGCGGCATCCAAACATTGTTCTCTTTATGGGTGCTGTTACTCAGCCTCCTAG
TTTGTCCATAGTCACAGAGTACTTATCAAGGGGTAGCTTGCATAAACTTCAGCATATGCCTGATGTTGGATTAATACTGG
ACGAGAAACGTCGCTTAAATATGGCATATGATGTGGCAAAGGGTATGAATTATCTTCATCAGCTTAGACCTCCTATTGTT
CATCGAGATTTAAAGTCTCTAAACCTCTTAGTGGACAGTACATACACAGTAAAGGTTGTAGCAGCTGTCGGTTTCAAGGG
TGAGAAACTTGAAGTTCCAACTTATGTAAATCCTTCAGTGGCTGCCCTAATTGATATCTGCTTGACTAGCGAGCCCTCAA
AGCGTCCATCGTTCTCGTATATCATGGAAACTTTACAAAAATTGATAAACAACTCTATTTCTCAATCACCTAATGTACAT
GTTCGGTGACAAATCTGTGGAGTGCAACCCCAGTAAATTATTTATTCTTAGACATGATCATCTGGTTTATCTTTCAGGTG
CGCCTGTCTTTGTATAAATAGATGTGAAATTGAATCATTTTTGCCGGCATCTATGGCTTTCATGTCTGGCAATTTGCTGC
CAGAGCCTCGTGTATCTGATATCTCAATATGCATTTATGTCT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002530885.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF31491.1| map3k delta-1 protein kinase, putative [Ricinus communis] 186 2e-45
  Manihot esculenta blastn  cassava4.1_003345m|PACid:17978355 954 0.0
  FGENESH CDS blastn  scaffold04116_FGENESH9 14 exon (s) 123695 - 130076 2058 bp, chain - 567 1e-161
  Arabidopsis thaliana blastx  AT5G03730.1 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821 158 3e-39
  Populus trichocarpa blastx  POPTR_0008s02600.1|PACid:18249674 177 8e-45
  Vitis vinifera blastx  GSVIVT01034710001|PACid:17840095 174 3e-44
  Ricinus communis blastx  29428.m000323|PACid:16802839 186 8e-48
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig09881_1_ORF1  Length: 162 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[1-122]T 4e-36 PD000001 Q7X9G6_EEEEE_Q7X9G6;Q7X9G6_EEEEE_Q7X9G6;
PS50011[1-162]T 20.740 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
PF07714[1-99]T 9e-26 PF07714 Pkinase_Tyr[127-145]T 0.0011 PF07714 Pkinase_TyrPkinase_Tyr
SM00219[1-145]T 2.3e-08 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[1-149]T 3e-06 SM00220 no descriptionno description
InterPro
IPR008271
Active_site
Serine/threonine protein kinase, active site
PS00108[79-91]T 8e-5 PS00108 PROTEIN_KINASE_STPROTEIN_KINASE_ST
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-145]T 3.3e-31 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[35-156]T 1.2e-16 G3DSA:1.10.510.10 no descriptionno description
G3DSA:3.30.200.20[1-34]T 4.1e-07 G3DSA:3.30.200.20 no descriptionno description
PTHR23257[2-99]T 1.6e-53 PTHR23257 SERINE-THREONINE PROTEIN KINASESERINE-THREONINE PROTEIN KINASE
PTHR23257:SF80[2-99]T 1.6e-53 PTHR23257:SF80 MAP3K DELTA-1 PROTEIN KINASEMAP3K DELTA-1 PROTEIN KINASE