Home > Keyword search > Contig09874

Summary
Sequence ID 
Sequence Length 685 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012283 (Contig09874)
 
 
Sequence
>Contig09874
AAAAGTTCTGGGATAGCATTAGGAGCTCCACAACTCTCTTCCCCAAGGCCTTCCCTGACCAATACAAGAGCATTCAAGTA
CTTGAAGGCGATGGCAAGGCTCCTGGTTCTATTCGCCTCTTCAGTTATGCTGAAGGTTCTCCGCTCGTTAAGGTATCGAA
GGAGAGGATCGATGCTGTAGATGAAGCAACCAAGCACGTCGCTTACAGTGTGATTGATGGTGACCTTCTGAAATACTACA
AGACTTTCAAGGGCTTCATATCTGTTGGTTCAAAGGAAAATGGTGAAAGCTTGGTGAAATGGAGCTGTGAGTACGAGAAG
GCGAGCGACGACGTTGAAGTCCCACATGTGATCAAGGATTTTGTAGTAAAGAACTTCAAGGAGGTGGATGAATATATTCT
GGATCACAAGGCTTAGAAGCACCTAGCTCACCTCGAGTTATATATATATATATGGGCAAATGAATAATTTGACTACCAAT
CCACTGGATGGTTGGCCTCTTGCAATTGTTTCCCAGAGAAGGAAAATCATGCTAAATAAATTAAAATAAAATAATGTTTT
AACCGCACACCAGTTCTTGTTGTGGGCTTAGGAGATGGCTATGGGTTGGGCTGTTCTGTTAACCCTGGATGGGCTTTATA
CTTAGATGCCTTTTTAGACTTTTCAGGCAATATTTGCATGTTGAA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002531396.1| Major latex protein, putative [Ricinus communis] gb|EEF30980.1| Major latex protein, putative [Ricinus communis] 213 2e-53
  Manihot esculenta blastn  cassava4.1_018205m|PACid:17967697 825 0.0
  FGENESH CDS blastn  scaffold06011_FGENESH19 2 exon (s) 167835 - 168393 468 bp, chain - 825 0.0
  Arabidopsis thaliana blastx  AT1G24020.2 | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155 175 3e-44
  Populus trichocarpa blastx  POPTR_0010s10600.1|PACid:18240309 209 2e-54
  Vitis vinifera blastx  GSVIVT01020183001|PACid:17829649 177 4e-45
  Ricinus communis blastx  29168.m000373|PACid:16802389 213 6e-56
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
detail
Sequence: Contig09874_1_ORF1  Length: 59 aa
No hits reported.
Sequence: Contig09874_3_ORF1  Length: 137 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[1-131]T 1e-43 PD000531 Q8L9L8_ARATH_Q8L9L8;Q8L9L8_ARATH_Q8L9L8;
PR00634[8-18]T 1.1e-09 PR00634 BETALLERGEN[33-42]T 1.1e-09 PR00634 BETALLERGEN[50-69]T 1.1e-09 PR00634 BETALLERGEN[93-109]T 1.1e-09 PR00634 BETALLERGEN[124-134]T 1.1e-09 PR00634 BETALLERGENBETALLERGEN
PF00407[1-135]T 6.9e-34 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[1-137]T 3.9e-23 G3DSA:3.30.530.20 no descriptionno description
SSF55961[1-134]T 2.7e-34 SSF55961 Bet v1-likeBet v1-like
Sequence: Contig09874_4_ORF2  Length: 51 aa
No hits reported.
Sequence: Contig09874_5_ORF2  Length: 55 aa
noIPR
unintegrated
unintegrated
seg[5-17]? NA seg segseg
Sequence: Contig09874_6_ORF2  Length: 50 aa
No hits reported.
Sequence: Contig09874_6_ORF3  Length: 60 aa
No hits reported.