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Summary
Sequence ID 
Sequence Length 763 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_012025 (Contig09495)
 
 
Sequence
>Contig09495
CTCTCGCAAGTATTATCAAAATGAGTTCCAGTGGCAACTCTCCCTACACTGTTACTGTCGAAAATACTATAATGCTCCAG
TCCAGTGAGGACCAGCTGACGAACTTTTTCACGCAGGCTGCAGAACTCCTCCCCAAGTATTTGCCCAATATATACAAGAA
GATCACGCCATGCCAGTCGAGCAAGGGTGTATATACATTTAAAATCGAGTATGCTAATGGATGTCCAATCGAGACAGAGA
CAGACCAGATTGATAAACTGGATCTTGAAAAACTGCAATGCTTTTACTCTGTAATTGATGGAGATGTGCTGAAGTATTAC
AAGAATCTCAAAGTCACTGTTACTTTGTATCCTCAAGAGAAAGGTTGCAAGGTGAAAAGGGCGTATGAGTATGAGAAGGT
AGATAACAGCTTTGCTCCAGCATTCTTCGAGTTCGAAATCGCTGTCCTCATTCAGGTGGATCAAGTGATTCAAAATGCTC
CTACCAAAAAATACTGAGGCATATGTTGCCTCACGTGCAGCATGCATGGAATATTAGATAGTAAATAAAACTCATCTCCC
AGGATACTTGGAGATGCTGTCCCATGCAAGCTGTTATCGTATGAATATGGTAAATAAAGTGGACTACTGCTCCACCCTGC
ACTTGTAATACGCAAGTGCATGTTGTATTTGGTTGTCGTTTGTATCATGTTTGCAAATGGAGATGGGTTACCTGTCTCCT
AGCTTTGTAAAATATTTGGTGTTTTATGGTATTATGTTTTCTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  gb|ACU14434.1| unknown [Glycine max] 68.9 7e-10
  Manihot esculenta blastn  cassava4.1_018111m|PACid:17967699 938 0.0
  FGENESH CDS blastn  scaffold06011_FGENESH18 2 exon (s) 151314 - 151872 477 bp, chain - 938 0.0
  Arabidopsis thaliana blastx  AT1G24020.2 | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155 57.8 8e-09
  Populus trichocarpa blastx  POPTR_0010s10600.1|PACid:18240309 62.4 4e-10
  Vitis vinifera blastx  GSVIVT01020183001|PACid:17829649 59.7 1e-09
  Ricinus communis blastx  29168.m000373|PACid:16802389 66.6 1e-11
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: Contig09495_1_ORF2  Length: 64 aa
No hits reported.
Sequence: Contig09495_3_ORF1  Length: 164 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[42-132]T 2e-08 PD000531 Q9LR93_ARATH_Q9LR93;Q9LR93_ARATH_Q9LR93;
PF00407[14-159]T 2.9e-05 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[77-161]T 7.3e-06 G3DSA:3.30.530.20 no descriptionno description
SSF55961[15-162]T 2.8e-15 SSF55961 Bet v1-likeBet v1-like
Sequence: Contig09495_4_ORF2  Length: 57 aa
No hits reported.
Sequence: Contig09495_5_ORF2  Length: 82 aa
noIPR
unintegrated
unintegrated
seg[30-40]? NA seg segseg
Sequence: Contig09495_5_ORF3  Length: 79 aa
noIPR
unintegrated
unintegrated
seg[4-18]? NA seg segseg
Sequence: Contig09495_6_ORF2  Length: 120 aa
No hits reported.