Home > Keyword search > Contig08714

Summary
Sequence ID 
Sequence Length 686 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_011495 (Contig08714)
 
 
Sequence
>Contig08714
TTCTAATCAAAGGGATCATAAGCCATGGGTGTGTCTACCTTCACACAAGAATACACATCCCTAGTTGCCCCATCACGTAT
GTTCAAGGCCTTAATTCTCGATTCCAACATTTTGATTCCAAAGCTCTTACCCCAGTTCATCAAAAGTGTGGATGTAATCC
AAGGTGGTGAAGGTGCTGGAACCATTGAACAAGTCAACTTCACTGAAGCCAGCAACTTGAAATATGTGAAGAATCGAATT
GAAGAACTAGATAAAGACAATCTGATGTGCAAGTATACTCTGATTGAGGGAGATCCACTGGGAGACAAGCTTGATTCTAT
TGCTTATGAAGTGAAGTTTGAGGCAGCAAGTGATGGAGGCTCAGTTTGTAAGATCACAAGCAATTATATTACTGTCGGAG
ATTTTACCATCGAAGAACAAACTTTTGAGGATGGCAAGGACAAGGCTGTAGGGATATACAAAGTTGTTGAAGCCTACCTC
TTGGAGAATCCTCATGTTTATGCTTAATGATTTTTTTTACCATGTGATTCGTTACATTTATACATGCCCTTCAACTTTGG
GCAGGGGAAAAATAAACCTTTATGCTTGTAATTGTGATTACTATCACAACTTATTATATTAAATCCTTTATCAATTCATT
ACATCTTTTCATTTTATTTTCTGTCAAAAAAAAAAAAAAAAAATGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002516987.1| Major allergen Pru ar, putative [Ricinus communis] gb|EEF45601.1| Major allergen Pru ar, putative [Ricinus communis] 281 6e-74
  Manihot esculenta blastn  cassava4.1_018042m|PACid:17962157 942 0.0
  FGENESH CDS blastn  scaffold01551_FGENESH451 2 exon (s) 2974445 - 2975029 483 bp, chain - 942 0.0
  Arabidopsis thaliana blastx  AT1G24020.2 | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155 51.2 6e-07
  Populus trichocarpa blastx  POPTR_0008s23130.1|PACid:18249105 235 3e-62
  Vitis vinifera blastx  GSVIVT01035076001|PACid:17840337 233 5e-62
  Ricinus communis blastx  29726.m004110|PACid:16806820 281 2e-76
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
detail
Sequence: Contig08714_1_ORF2  Length: 161 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[12-152]T 3e-39 PD000531 Q6QHU3_PRUAV_Q6QHU3;Q6QHU3_PRUAV_Q6QHU3;
PR00634[4-24]T 5.2e-36 PR00634 BETALLERGEN[27-37]T 5.2e-36 PR00634 BETALLERGEN[51-60]T 5.2e-36 PR00634 BETALLERGEN[67-86]T 5.2e-36 PR00634 BETALLERGEN[86-99]T 5.2e-36 PR00634 BETALLERGEN[111-127]T 5.2e-36 PR00634 BETALLERGEN[145-155]T 5.2e-36 PR00634 BETALLERGENBETALLERGEN
PF00407[2-156]T 2.4e-34 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[3-159]T 4.6e-48 G3DSA:3.30.530.20 no descriptionno description
SSF55961[3-161]T 6.8e-46 SSF55961 Bet v1-likeBet v1-like
Sequence: Contig08714_2_ORF2  Length: 56 aa
No hits reported.
Sequence: Contig08714_3_ORF1  Length: 55 aa
No hits reported.
Sequence: Contig08714_4_ORF2  Length: 51 aa
No hits reported.
Sequence: Contig08714_6_ORF2  Length: 106 aa
noIPR
unintegrated
unintegrated
seg[4-13]? NA seg seg[20-32]? NA seg segseg