Home > Keyword search > Contig08377

Summary
Sequence ID 
Sequence Length 647 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_011253 (Contig08377)
 
 
Sequence
>Contig08377
TGCGAGGTCTACAATCAGTAGAGACTCCAGTTGGANNTCCGGCCGACGTCGTTTGGGATGCTTATCGTGGTCTTGAGCTG
GGAAGGCTCGTCGATCAACTTCTGCCTGACGTTATTGGCAAAGTAGAGGTTGTGCAAGGTGATGGAGGCGTCGGTACTAT
CGTCAAACTTACATTTCCTGCTGGAACTCCTGGAGTAGGTTACCTGAAGGAAATATTTACAAAGATTGATGATGATGATC
GTGTGAAGGAAACAGAAATCATAGAAGGAGGTTACAAAGATCTTGGCTTTGATCTTTTTCGTTGTCGCTTGGAGATCATT
GAGAAGGATGCTGAATCAAGTATCATCAGATCCACATTAGAGTATGAGATAGATGACACCAAACCTGAACTTGCATCTTT
AGTCTCCACCAAACAATTTGAGATTATGGCAGAAACTGTTGGGAAATATCTGGCTGACAAGAAATCCATCTCATAGACAC
AGAGTCCATACTCTTCTGATGCATTTTCCCTACTTCTCATGACAAAGTAGGCAACGATATGTATTCAGAAATAAATTAAT
AATACTTCAAAGTTCTGCAGCGAATGCTCTGTTAAGCTAGCACATTGTTCTGTCTCAACGTTCAATAAAGTCATCAATTT
TCATCAA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002520059.1| conserved hypothetical protein [Ricinus communis] gb|EEF42383.1| conserved hypothetical protein [Ricinus communis] 251 6e-65
  Manihot esculenta blastn  cassava4.1_018106m|PACid:17965574 932 0.0
  FGENESH CDS blastn  scaffold03614_FGENESH122 3 exon (s) 992757 - 994221 552 bp, chain - 581 1e-165
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx  POPTR_0003s08640.1|PACid:18217411 206 2e-53
  Vitis vinifera blastx  GSVIVT01024369001|PACid:17832585 133 8e-32
  Ricinus communis blastx  30073.m002283|PACid:16816866 251 2e-67
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: Contig08377_3_ORF1  Length: 157 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[29-122]T 7e-20 PD000531 Q7F9M1_EEEEE_Q7F9M1;Q7F9M1_EEEEE_Q7F9M1;
PF00407[2-153]T 6.2e-06 PF00407 Bet_v_IBet_v_I
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[5-156]T 5e-13 G3DSA:3.30.530.20 no descriptionno description
SSF55961[1-152]T 4.1e-28 SSF55961 Bet v1-likeBet v1-like
Sequence: Contig08377_5_ORF1  Length: 90 aa
noIPR
unintegrated
unintegrated
seg[78-89]? NA seg segseg
Sequence: Contig08377_6_ORF2  Length: 106 aa
No hits reported.