Home > Keyword search > Contig08213

Summary
Sequence ID 
Sequence Length 674 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_011140 (Contig08213)
 
 
Sequence
>Contig08213
CACGAGGTATACGGCGGGGTATAGTAATGCTGCAGTGTGCAACTGGTCAATTCCCATATTCTCCGCCAGACCGGAGTGAA
GACTGGGCTAGCGTTTATCAACTTGTGGCAGCTATTGTAAAGCAACCAGAACCTTGTGCACCCTCTGATCAATTTTCCCC
AGAGTTTTGCTCATTCATATCTTCATGTCTGCAGAAAGACCCAACAAAAAGATGGTCAGCACGTGACCTTCTGGAACATC
CATTCATGATCAGGTATGGCGACCTGCAAGCAGAAGCCCTCAAATCTTACTTCACAAACGCAGGCTCTCCAGAAACTTCT
AGTAAGTAAGTATGATCAGACAGCTCTACTTCAAGAACTGGCTAAAGAATGTTTACCACTACTTCGAATTGCAAAGCATC
TGCCATATCAACACAGCTAAAGCATCTCCTCGTGGGTGTTTTCTACCTTATATATATGTGTGTATTCTATGAATTTGTTG
CTCAAGAAAGACAGGGCCACAAAAAATCTATCAATCAGGCATCGAATCTATCTTTGTATTAAAATCGCTAGGTTTCTATT
TATCAACTGTTGAATATTATAGTGCCCTGATCCGCATTGATAAACAGGTGTCTTATTTGTAAAACAATATGCGTAGCTTT
ATTTTTCGTCAAGATAATAAAAATTTTCATTTAG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  gb|ACY82515.1| mitogen-activated protein kinase kinase [Malus x domestica] 140 2e-31
  Manihot esculenta blastn  cassava4.1_010246m|PACid:17986592 613 1e-175
  FGENESH CDS blastn  scaffold09809_FGENESH24 9 exon (s) 552716 - 555401 1143 bp, chain + 605 1e-172
  Arabidopsis thaliana blastx  AT4G26070.3 | Symbols: MEK1, NMAPKK, ATMEK1, MKK1 | MAP kinase/ ERK kinase 1 | chr4:13217797-13219695 FORWARD LENGTH=354 127 5e-30
  Populus trichocarpa blastx  POPTR_0018s05420.2|PACid:18214792 131 4e-31
  Vitis vinifera blastx  GSVIVT01015155001|PACid:17825956 135 2e-32
  Ricinus communis blastx  29912.m005307|PACid:16813186 117 4e-27
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: Contig08213_1_ORF2  Length: 56 aa
No hits reported.
Sequence: Contig08213_1_ORF3  Length: 50 aa
No hits reported.
Sequence: Contig08213_3_ORF1  Length: 108 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[6-81]T 1e-26 PD000001 O04440_ARATH_O04440;O04440_ARATH_O04440;
PS50011[1-82]T 10.153 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[6-91]T 6.7e-13 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[6-82]T 7e-15 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[6-85]T 1.2e-08 G3DSA:1.10.510.10 no descriptionno description
PTHR22986[6-97]T 5e-39 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF39[6-97]T 5e-39 PTHR22986:SF39 MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2
Sequence: Contig08213_3_ORF2  Length: 58 aa
No hits reported.