Home > Keyword search > Contig07673

Summary
Sequence ID 
Sequence Length 780 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold07970
Probe ID of RIKEN ver.1 microarray  -
 
 
Sequence
>Contig07673
CTTGTGACCTCTGTTCTCTGTTTTCTTTCCTTCGAAGAAACCGAACCAAAACCCAACAAGGAGGAGAACAACTCTCAACT
CCTCTCTTTCTAAATCATCTACTTGATCTGCTTACTCTTCTTTCTCCCATGGATTGGGTTCGCGGAGATTCCATTGATTG
TGGGAGCTTTTCCACTGTAAATTTGGCAATTCCCACGAAAACCTCTTCTCCTTTAATGGCGGTGAAATCTTGTGATCTTT
TTTACTCTTCTTTGCTTGAGAATGAAAAGGATGTTTTGAATCAGCTTGGCAATTGCGAGCATATAATCAAGTGTTTCGGC
GGCGATCAGAGTGTGGAAAACGGTCAGAGGTTGTATAACTTGCTATTGGAGTATGCCCCTGGTGGCAGTTTATCTCGTTT
GGTGAAGAATTCTGGTGGTTGCTTGCCGGAATCAGATGCCAGACGCTACACCAAATCGATACTAAAGGGTCTTCGTTATA
TTCACGCAAAAGGGTTTGCTCACTGTGACATAAAGCTTCAAAATATCTTGTTGTTTGAGGATGGGGACGTGAAGATTGCA
GACTTTGGATTAGCCAAGAAAACAGGGGAAGAACAGAGTGATGAACAGGGGAGAGTGGAAATTCGAGGAACTCCTCTGTA
CATGTCCCCAGAATCAGTCAACGAAAACGAGTACGATTCACCGTGTGATATTTGGGCTCTTGGGTGTGGGTTGGTGGAGA
TGGTGACCGGAAAACCGGCCTGGAACTGCAAGCCGGAATCAAACATCGCATCCTTGTTGA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002523600.1| ATP binding protein, putative [Ricinus communis] gb|EEF38795.1| ATP binding protein, putative [Ricinus communis] 332 5e-89
  Manihot esculenta blastn  cassava4.1_010778m|PACid:17992966 1277 0.0
  FGENESH CDS blastn  scaffold03060_FGENESH37 2 exon (s) 304624 - 305905 1128 bp, chain + 1277 0.0
  Arabidopsis thaliana blastx  AT3G50310.1 | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342 251 5e-67
  Populus trichocarpa blastx  POPTR_0005s18230.1|PACid:18208980 284 5e-77
  Vitis vinifera blastx  GSVIVT01022117001|PACid:17831030 225 2e-59
  Ricinus communis blastx  30115.m001222|PACid:16818001 332 2e-91
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: Contig07673_1_ORF2  Length: 50 aa
No hits reported.
Sequence: Contig07673_3_ORF1  Length: 259 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[49-259]T 2e-62 PD000001 Q6K1M3_ARATH_Q6K1M3;Q6K1M3_ARATH_Q6K1M3;
PS50011[45-259]T 34.153 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
SM00219[45-259]T 1.5e-09 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[45-259]T 5e-34 SM00220 no descriptionno description
InterPro
IPR008271
Active_site
Serine/threonine protein kinase, active site
PS00108[165-177]? NA PS00108 PROTEIN_KINASE_STPROTEIN_KINASE_ST
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[31-247]T 3.2e-54 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[45-245]T 4.5e-50 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[115-247]T 2e-39 G3DSA:1.10.510.10 no descriptionno description
PTHR22986[45-247]T 4e-89 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF58[45-247]T 4e-89 PTHR22986:SF58 MITOGEN ACTIVATED PROTEIN KINASE-RELATEDMITOGEN ACTIVATED PROTEIN KINASE-RELATED
seg[28-40]? NA seg segseg
Sequence: Contig07673_4_ORF2  Length: 116 aa
No hits reported.
Sequence: Contig07673_4_ORF3  Length: 64 aa
No hits reported.
Sequence: Contig07673_5_ORF1  Length: 86 aa
noIPR
unintegrated
unintegrated
seg[56-65]? NA seg segseg