Home > Keyword search > Contig07299

Summary
Sequence ID 
Sequence Length 507 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_010443 (Contig07299)
 
 
Sequence
>Contig07299
CAGATGTGTGCAATAAAAGAAGTCAGAGTTGTTTCAGATGATCAGACATCAAAAGAATGTCTTAAGCAACTGAACCAGGA
GATAAATTTACTTAGTCAGCTTTCACATCCAAACATTGTTCGATATTATGGAAGTGAACTGAGTGAAGAAACACTTTCAG
TTTATCTAGAGTATGTCTCTGGTGGCTCAATTCATAAATTACTTCAAGAATATGGCGCCTTCAAGGAACCCGTTATTCAA
AATTATACCAGGCAGATTCTATGTGGTCTTTCCTATTTGCATGGAAGAAATACTGTACACAGGGATATCAAAGGGGCTAA
CATATTAGTTGATCCTAATGGTGAAATCAAGCTGGTTGACTTTGGCATGGCTAAACATATTACTGCTTGTTCTTCAATGC
TTTCATTCAAGGGAAGTCCTTACTGGATGGCGCCTGAGGTTGTAATGAATACAAATGGCTACAGTCTTGCAGTCGACATT
TGGAGTTTAGGATGCACAATTCTTGAA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002529731.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] gb|EEF32660.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] 332 1e-89
  Manihot esculenta blastn  cassava4.1_003326m|PACid:17963477 1005 0.0
  FGENESH CDS blastn  scaffold12795_FGENESH2 8 exon (s) 21181 - 24398 1374 bp, chain + 868 0.0
  Arabidopsis thaliana blastx  AT1G53570.4 | Symbols: MAP3KA | mitogen-activated protein kinase kinase kinase 3 | chr1:19987391-19990733 FORWARD LENGTH=608 310 3e-85
  Populus trichocarpa blastx  POPTR_0005s06330.1|PACid:18208825 328 1e-90
  Vitis vinifera blastx  GSVIVT01026487001|PACid:17834182 315 9e-87
  Ricinus communis blastx  29691.m000286|PACid:16805903 332 6e-92
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: Contig07299_1_ORF1  Length: 169 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[1-169]T 1e-85 PD000001 Q6RFY3_LYCES_Q6RFY3;Q6RFY3_LYCES_Q6RFY3;
PS50011[1-169]T 39.128 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
PR00109[56-69]T 3.2e-09 PR00109 TYRKINASE[92-110]T 3.2e-09 PR00109 TYRKINASE[158-169]T 3.2e-09 PR00109 TYRKINASETYRKINASE
SM00219[1-168]T 9.3e-09 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[1-169]T 1.6e-25 SM00220 no descriptionno description
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-169]T 1.5e-56 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR015748
Domain
Mitogen activated protein kinase kinase kinase 3
PTHR22986:SF64[1-169]T 3.3e-109 PTHR22986:SF64 MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[4-169]T 8.4e-55 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[31-169]T 8e-45 G3DSA:1.10.510.10 no descriptionno description
PTHR22986[1-169]T 3.3e-109 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
Sequence: Contig07299_2_ORF2  Length: 52 aa
No hits reported.