Home > Keyword search > Contig06767

Summary
Sequence ID 
Sequence Length 995 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_010037 (Contig06767)
 
 
Sequence
>Contig06767
CCCACTTCTGGTTAGTTTCTGCGAAAATAAAGGGACCAGAAGGCACCAATGGCTACAATTTTCCGTGGATTAGGAGCTGC
TACGGCTTTAACGGCTTCTAATTCCTTCGATTTTAAGAAATTACAGCTCACCTCTCCCAGATCCTTTTCGGAGAGAAAGG
CGAGCCTTCTCGTGGTCAGATCTGATGGGAGCGGGAACCTCAACCTAGGTTTTGATTCAAGAACTCGCAGGGCCGAGCAG
TTGATTACCAATGCTGTTGCGACGAAGGCTGAGAATTCTGCCGCTTCCTCGGCAGCTAAATCTGGACATGAACTTCTACT
CTTTGAGGCCCTAAGAGAAGGCTTGGAAGAAGAAATGGACAGAGATCCCACTGTTTGTGTCATGGGCGAAGATGTGGGTC
ATTATGGAGGTTCTTACAAGGTGACGAAAGGCCTGGCAAATAAATATGGGGATCTCAGAGTCCTTGATACCCCTATTGCT
GAGAACTCATTCACTGGTATGGGTATAGGTGCTGCCATGACTGGCTTGAGGCCAGTTGTTGAGGGTATGAACATGGGGTT
TCTCCTTCTAGCTTTCAATCAGATCTCAAATAACTGTGGCATGCTTCACTACACATCAGGTGGACAGTTTAAAATACCCA
TAGTTATTCGTGGACCTGGTGGAGTTGGGCGGCAACTGGGTGCTGAGCACTCACAACGCCTTGAATCATATTTTCAATCA
ATTCCTGGAATCCAAATGGTTGCATGCTCAACCCCTTATAATGCCAAGGGCTTGATGAAAGCAGCAATCCGAAGTGAGAA
CCCAGTGATACTTTTTGAACATGTTTTGCTTTACAACCTCAAGGAGAGAATCCCTGATGAAGAATATATCTGTAATCTTG
AGGAAGCTGAGATTGTTAGGCCTGGAGAGCATGTCACTATTTTAACCTACTCAAGGATGAGATATCATGTGATGCACGCT
GCCAAAACTTTAGTGAACAAAGGGATATGATCCTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002519664.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF42637.1| pyruvate dehydrogenase, putative [Ricinus communis] 561 1e-158
  Manihot esculenta blastn  cassava4.1_008778m|PACid:17972265 1798 0.0
  FGENESH CDS blastn  scaffold03859_FGENESH19 6 exon (s) 172069 - 176001 1401 bp, chain + 1338 0.0
  Arabidopsis thaliana blastx  AT2G34590.1 | Symbols: | Transketolase family protein | chr2:14568956-14570844 REVERSE LENGTH=406 494 1e-140
  Populus trichocarpa blastx  POPTR_0017s11290.1|PACid:18210740 540 1e-154
  Vitis vinifera blastx  GSVIVT01026353001|PACid:17834089 392 1e-109
  Ricinus communis blastx  29693.m001991|PACid:16805961 561 1e-160
 
 
Gene Ontology 
InterProScan
GO:0003824
Molecular Function
catalytic activity
GO:0008152
Biological Process
metabolic process
 
 
InterProScan result 
Sequence: Contig06767_1_ORF2  Length: 319 aa
InterPro
IPR005475
Domain
Transketolase, central region
PF02779[93-271]T 8e-70 PF02779 Transket_pyrTransket_pyr
InterPro
IPR005476
Domain
Transketolase, C-terminal
PF02780[284-319]T 3.2e-10 PF02780 Transketolase_CTransketolase_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[91-286]T 3.9e-69 G3DSA:3.40.50.970 no descriptionno description
PTHR11624[128-319]T 1.2e-124 PTHR11624 DEHYDROGENASE RELATEDDEHYDROGENASE RELATED
PTHR11624:SF11[128-319]T 1.2e-124 PTHR11624:SF11 PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNITPYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT
seg[83-91]? NA seg seg[202-214]? NA seg segseg
SSF52518[91-294]T 6.7e-66 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig06767_4_ORF2  Length: 57 aa
No hits reported.
Sequence: Contig06767_4_ORF3  Length: 51 aa
No hits reported.
Sequence: Contig06767_5_ORF2  Length: 64 aa
noIPR
unintegrated
unintegrated
seg[11-23]? NA seg segseg
Sequence: Contig06767_6_ORF2  Length: 54 aa
No hits reported.
Sequence: Contig06767_6_ORF3  Length: 128 aa
noIPR
unintegrated
unintegrated
seg[12-30]? NA seg seg[35-49]? NA seg segseg